C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid (GABA) A receptor, alpha 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145863 GABRA6 9606 + 5:161547063-161702593 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000274545 GABRA6-001 161685557-161702106 protein_coding
  ENST00000517823 GABRA6-008 161687496-161690241 protein_coding
  ENST00000518888 GABRA6-006 161631730-161685971 processed_transcript
  ENST00000520000 GABRA6-007 161687480-161690299 protein_coding
  ENST00000521520 GABRA6-002 161689535-161702593 retained_intron
  ENST00000522269 GABRA6-005 161547063-161688994 processed_transcript
  ENST00000523217 GABRA6-003 161685748-161702592 protein_coding
  ENST00000523691 GABRA6-009 161689039-161690340 protein_coding
  ENST00000524220 GABRA6-004 161686062-161689167 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverLungOvaryPlacentaTestisENST00000274545ENST00000517823ENST00000518888ENST00000521520ENST00000522269ENST00000524220
Transcript ID Adipose Adrenal Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000274545 N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000517823 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00
ENST00000518888 N/A N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A N/A
ENST00000521520 N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000522269 0.305±0.00 0.499±0.00 N/A 0.243±0.00 0.269±0.00 0.185±0.00 0.258±0.00 N/A N/A 0.132±0.08
ENST00000524220 N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A 0.087±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Q CIL_00016Q_0002 CGP 5:161547063-161899969

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006821 IEA chloride transport
GO:0007165 TAS signal transduction
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0008503 TAS benzodiazepine receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058736 gabra6b gamma-aminobutyric acid (GABA) A receptor, alpha 6b protein_coding Danio_rerio
ENSMUSG00000020428 Gabra6 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 protein_coding Mus_musculus

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