C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00016Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058736-ENSDARG00000068989 CGP 7955 21:40623673-40733556
GeneTranscriptPositionBiotype
ENSDARG00000058736 (gabra6b)
gamma-aminobutyric acid (GABA) A receptor, alpha 6b 		ENSDART00000124708 (gabra6b-201) 40623673-40667527 protein_coding
ENSDARG00000068989 (gabra1)
gamma-aminobutyric acid (GABA) A receptor, alpha 1 		ENSDART00000100000 (gabra1-201) 40675972-40733032 protein_coding
ENSDART00000144767 (gabra1-001) 40728046-40733556 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00016Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145863-ENSG00000022355 CGP 9606 5:161547063-161899969
GeneTranscriptPositionBiotype
ENSG00000022355 (GABRA1)
gamma-aminobutyric acid (GABA) A receptor, alpha 1 		ENST00000023897 (GABRA1-002) 161847191-161897666 protein_coding
ENST00000393943 (GABRA1-005) 161847934-161897666 protein_coding
ENST00000428797 (GABRA1-001) 161847679-161899969 protein_coding
ENST00000437025 (GABRA1-004) 161848444-161899954 protein_coding
ENST00000519542 (GABRA1-009) 161873098-161891002 retained_intron
ENST00000519621 (GABRA1-008) 161850597-161873230 protein_coding
ENST00000521339 (GABRA1-006) 161848892-161865788 protein_coding
ENST00000522651 (GABRA1-007) 161850386-161865789 protein_coding
ENSG00000118990 (GLRXP3)
glutaredoxin (thioltransferase) pseudogene 3 		ENST00000470810 (GLRXP3-001) 161751448-161751768 processed_pseudogene
ENSG00000145863 (GABRA6)
gamma-aminobutyric acid (GABA) A receptor, alpha 6 		ENST00000274545 (GABRA6-001) 161685557-161702106 protein_coding
ENST00000517823 (GABRA6-008) 161687496-161690241 protein_coding
ENST00000518888 (GABRA6-006) 161631730-161685971 processed_transcript
ENST00000520000 (GABRA6-007) 161687480-161690299 protein_coding
ENST00000521520 (GABRA6-002) 161689535-161702593 retained_intron
ENST00000522269 (GABRA6-005) 161547063-161688994 processed_transcript
ENST00000523217 (GABRA6-003) 161685748-161702592 protein_coding
ENST00000523691 (GABRA6-009) 161689039-161690340 protein_coding
ENST00000524220 (GABRA6-004) 161686062-161689167 retained_intron
ENSG00000145864 (GABRB2)
gamma-aminobutyric acid (GABA) A receptor, beta 2 		ENST00000274547 (GABRB2-201) 161288429-161548124 protein_coding
ENST00000353437 (GABRB2-001) 161293864-161548227 protein_coding
ENST00000393959 (GABRB2-002) 161288429-161546643 protein_coding
ENST00000517547 (GABRB2-006) 161293898-161546697 protein_coding
ENST00000517901 (GABRB2-003) 161293864-161548135 protein_coding
ENST00000520240 (GABRB2-004) 161293864-161548124 protein_coding
ENST00000522758 (GABRB2-005) 161459135-161546725 retained_intron
ENST00000523730 (GABRB2-007) 161546746-161549044 processed_transcript
ENST00000612710 (GABRB2-202) 161329434-161546679 protein_coding
ENSG00000253403 (RP11-348M17.2)
 ENST00000521984 (RP11-348M17.2-001) 161687347-161689408 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016Q_0001ENSDARG00000058736ENSDART00000124708ENSDARG00000068989ENSDART00000100000ENSDART00000144767CIL_00016Q_0002ENSG00000022355ENST00000023897ENST00000393943ENST00000428797ENST00000437025ENST00000519542ENST00000519621ENST00000521339ENST00000522651ENSG00000118990ENST00000470810ENSG00000145863ENST00000274545ENST00000517823ENST00000518888ENST00000520000ENST00000521520ENST00000522269ENST00000523217ENST00000523691ENST00000524220ENSG00000145864ENST00000274547ENST00000353437ENST00000393959ENST00000517547ENST00000517901ENST00000520240ENST00000522758ENST00000523730ENST00000612710ENSG00000253403ENST00000521984
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016Q_0001ENSDARG00000058736ENSDART00000124708ENSDARG00000068989ENSDART00000100000ENSDART00000144767CIL_00016Q_0002ENSG00000022355ENST00000023897ENST00000393943ENST00000428797ENST00000437025ENST00000519542ENST00000521339ENSG00000118990ENST00000470810ENSG00000145863ENST00000274545ENST00000517823ENST00000518888ENST00000521520ENST00000522269ENST00000524220ENSG00000145864ENST00000274547ENST00000393959ENST00000517547ENST00000517901ENST00000520240ENST00000522758ENSG00000253403ENST00000521984
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058736 ENSDART00000124708 N/A N/A N/A N/A N/A N/A 0.711±0.00 0.303±0.00 N/A N/A 0.434±0.00 N/A N/A N/A
ENSDARG00000068989 ENSDART00000100000 N/A N/A N/A 25.192±0.00 N/A N/A N/A N/A 0.057±0.00 N/A 2.892±0.00 N/A N/A N/A
ENSDART00000144767 N/A N/A N/A 48.276±0.00 N/A N/A N/A 0.876±0.54 N/A N/A 1.063±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000022355 ENST00000023897 N/A 0.026±0.00 N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393943 N/A N/A N/A 18.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00
ENST00000428797 N/A N/A 0.036±0.00 19.009±14.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437025 N/A 0.033±0.00 N/A 24.188±0.00 0.003±0.00 0.017±0.00 N/A 0.013±0.00 N/A N/A 0.016±0.00 N/A 0.040±0.00 0.040±0.00
ENST00000519542 N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A
ENST00000519621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521339 N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A N/A 0.122±0.00 0.119±0.00
ENST00000522651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000118990 ENST00000470810 0.961±0.00 1.658±0.00 N/A N/A 2.163±0.00 N/A N/A 3.292±0.00 2.826±0.00 1.223±0.00 3.673±0.00 1.264±0.00 N/A 0.137±0.00
ENSG00000145863 ENST00000274545 N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00
ENST00000518888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A N/A
ENST00000520000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521520 N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000522269 0.305±0.00 0.499±0.00 N/A N/A 0.243±0.00 N/A 0.269±0.00 N/A 0.185±0.00 0.258±0.00 N/A N/A N/A 0.132±0.08
ENST00000523217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524220 N/A N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A
ENSG00000145864 ENST00000274547 N/A N/A N/A 2.023±0.00 N/A N/A N/A N/A 0.114±0.00 0.439±0.00 N/A N/A N/A 0.309±0.00
ENST00000353437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393959 0.075±0.00 N/A 0.133±0.00 14.886±1.45 0.144±0.00 N/A 0.028±0.02 N/A N/A 0.341±0.00 0.092±0.03 0.033±0.01 0.005±0.00 N/A
ENST00000517547 N/A N/A 0.503±0.00 N/A N/A N/A N/A N/A N/A N/A 0.587±0.00 N/A N/A N/A
ENST00000517901 N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000520240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A
ENST00000522758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.286±0.00 N/A N/A
ENST00000523730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253403 ENST00000521984 N/A N/A N/A N/A N/A 1.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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