C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: shroom family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146950 SHROOM2 9606 + X:9786456-9949443 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380913 SHROOM2-001 9786456-9949443 protein_coding
  ENST00000418909 SHROOM2-201 9912434-9949441 protein_coding
  ENST00000452575 SHROOM2-002 9912683-9946708 protein_coding
  ENST00000493668 SHROOM2-003 9898145-9937146 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380913ENST00000418909
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380913 0.214±0.00 0.346±0.00 N/A 0.128±0.08 0.225±0.02 0.087±0.05 1.284±0.27 0.498±0.38 0.305±0.22 0.048±0.00 1.866±1.50 2.149±0.13 3.231±2.60
ENST00000418909 N/A N/A 0.536±0.00 N/A N/A N/A 1.414±0.00 0.150±0.00 N/A N/A N/A N/A 5.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TU CIL_0002TU_0002 CGP X:9786456-9968352

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0002089 ISS lens morphogenesis in camera-type eye
GO:0003779 ISS actin binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 ISS cytoskeleton
GO:0005874 IEA microtubule
GO:0005886 ISS plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005913 ISS cell-cell adherens junction
GO:0005923 ISS tight junction
GO:0005938 IEA cell cortex
GO:0007420 ISS brain development
GO:0008013 ISS beta-catenin binding
GO:0008057 ISS eye pigment granule organization
GO:0015280 TAS ligand-gated sodium channel activity
GO:0016324 ISS apical plasma membrane
GO:0016477 ISS cell migration
GO:0019904 IEA protein domain specific binding
GO:0030835 IEA negative regulation of actin filament depolymerization
GO:0030864 IDA cortical actin cytoskeleton
GO:0031941 IEA filamentous actin
GO:0032401 IEA:ISS establishment of melanosome localization
GO:0032438 ISS melanosome organization
GO:0035725 TAS sodium ion transmembrane transport
GO:0043010 ISS camera-type eye development
GO:0043025 IEA neuronal cell body
GO:0043296 IEA apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0043583 ISS ear development
GO:0045176 IEA:ISS apical protein localization
GO:0045217 IEA cell-cell junction maintenance
GO:0048593 ISS camera-type eye morphogenesis
GO:0051015 IEA:ISS actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076371 SHROOM2 (1 of 2) shroom family member 2 protein_coding Danio_rerio
ENSDARG00000076416 SHROOM2 (2 of 2) shroom family member 2 protein_coding Danio_rerio
ENSMUSG00000045180 Shroom2 shroom family member 2 protein_coding Mus_musculus

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