C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: shroom family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045180 Shroom2 10090 - X:152609509-152769465 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062317 Shroom2-001 152609992-152769465 protein_coding
  ENSMUST00000101141 Shroom2-201 152609509-152769461 protein_coding
  ENSMUST00000124141 Shroom2-005 152618914-152643924 processed_transcript
  ENSMUST00000137217 Shroom2-002 152609992-152644543 processed_transcript
  ENSMUST00000141677 Shroom2-004 152619123-152644110 processed_transcript
  ENSMUST00000152746 Shroom2-003 152612528-152673240 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062317ENSMUST00000101141ENSMUST00000124141ENSMUST00000137217ENSMUST00000152746
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062317 0.677±0.60 0.426±0.15 0.291±0.05 0.763±0.00 0.432±0.23 0.880±0.07 0.261±0.06 1.072±0.21 0.717±0.56 1.045±0.26 0.082±0.01 1.980±0.86 1.934±0.94 0.248±0.04
ENSMUST00000101141 0.537±0.29 0.889±0.33 0.336±0.03 N/A 0.203±0.05 1.012±0.35 0.368±0.05 1.524±0.36 0.652±0.53 1.187±0.70 0.141±0.00 1.680±0.91 0.939±0.59 0.170±0.00
ENSMUST00000124141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.748±0.00 N/A N/A
ENSMUST00000137217 N/A N/A N/A 3.287±1.29 N/A 2.364±0.00 N/A N/A N/A N/A 0.097±0.01 0.854±0.00 N/A 0.198±0.00
ENSMUST00000152746 N/A 0.335±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TC CIL_0002TC_0002 CGP X:152563334-152769465

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0002089 ISS lens morphogenesis in camera-type eye
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005874 IEA microtubule
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005913 IDA cell-cell adherens junction
GO:0005923 IDA tight junction
GO:0005938 IDA cell cortex
GO:0007420 ISS brain development
GO:0008013 IDA beta-catenin binding
GO:0008057 ISS eye pigment granule organization
GO:0016324 IDA apical plasma membrane
GO:0016477 IMP cell migration
GO:0019904 IPI protein domain specific binding
GO:0030835 IDA negative regulation of actin filament depolymerization
GO:0030864 IDA cortical actin cytoskeleton
GO:0031941 IDA filamentous actin
GO:0032401 ISS establishment of melanosome localization
GO:0032438 IMP melanosome organization
GO:0043010 ISS camera-type eye development
GO:0043025 IDA neuronal cell body
GO:0043296 IDA apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0043583 ISS ear development
GO:0045176 ISS apical protein localization
GO:0045217 IDA cell-cell junction maintenance
GO:0048593 ISS camera-type eye morphogenesis
GO:0051015 IDA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076371 SHROOM2 (1 of 2) shroom family member 2 protein_coding Danio_rerio
ENSDARG00000076416 SHROOM2 (2 of 2) shroom family member 2 protein_coding Danio_rerio
ENSG00000146950 SHROOM2 shroom family member 2 protein_coding Homo_sapiens

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