C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transforming, acidic coiled-coil containing protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147526 TACC1 9606 + 8:38728186-38853028 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276520 TACC1-003 38787263-38853028 protein_coding
  ENST00000317827 TACC1-001 38787204-38853028 protein_coding
  ENST00000517336 TACC1-024 38824652-38827288 processed_transcript
  ENST00000518415 TACC1-006 38728640-38848132 protein_coding
  ENST00000518809 TACC1-014 38820332-38850775 protein_coding
  ENST00000519093 TACC1-011 38839284-38853028 retained_intron
  ENST00000519416 TACC1-004 38728186-38850793 protein_coding
  ENST00000520340 TACC1-026 38728588-38839449 protein_coding
  ENST00000520611 TACC1-016 38820547-38848521 protein_coding
  ENST00000520615 TACC1-002 38728190-38850793 protein_coding
  ENST00000520973 TACC1-015 38788106-38848276 protein_coding
  ENST00000521050 TACC1-008 38757277-38831177 protein_coding
  ENST00000521154 TACC1-019 38788361-38819622 retained_intron
  ENST00000521528 TACC1-020 38788106-38819920 protein_coding
  ENST00000521568 TACC1-022 38840051-38843563 retained_intron
  ENST00000521642 TACC1-007 38757239-38831177 protein_coding
  ENST00000521866 TACC1-033 38819921-38848142 protein_coding
  ENST00000521935 TACC1-029 38788163-38820243 protein_coding
  ENST00000522474 TACC1-017 38728344-38745201 processed_transcript
  ENST00000522544 TACC1-030 38785674-38819714 processed_transcript
  ENST00000522548 TACC1-023 38846469-38848282 retained_intron
  ENST00000522752 TACC1-009 38757299-38840618 processed_transcript
  ENST00000522904 TACC1-031 38757281-38836291 protein_coding
  ENST00000522955 TACC1-012 38805452-38828067 retained_intron
  ENST00000522983 TACC1-027 38728617-38745352 processed_transcript
  ENST00000523239 TACC1-025 38785911-38838507 processed_transcript
  ENST00000523834 TACC1-028 38788322-38819750 processed_transcript
  ENST00000524193 TACC1-021 38805450-38820011 protein_coding
  ENST00000524354 TACC1-018 38785674-38819631 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276520ENST00000317827ENST00000518415ENST00000518809ENST00000519093ENST00000519416ENST00000520340ENST00000520615ENST00000522955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276520 32.056±0.00 4.650±0.00 N/A 5.839±0.00 5.036±0.00 7.959±0.00 5.976±0.00 11.924±0.00 4.431±0.00 7.008±0.00 1.868±0.35 8.006±4.08 2.447±0.00 N/A
ENST00000317827 12.634±0.00 7.888±0.00 N/A 7.731±0.94 10.648±2.42 3.627±0.00 6.653±0.00 3.228±0.00 2.049±0.00 11.994±5.03 N/A 6.757±0.74 3.836±0.00 5.437±2.06
ENST00000518415 N/A N/A 4.553±0.00 N/A 9.403±0.00 N/A 2.718±0.00 1.467±0.00 N/A N/A N/A N/A N/A N/A
ENST00000518809 N/A N/A N/A 6.127±0.00 N/A N/A N/A N/A N/A N/A N/A 5.967±0.00 N/A N/A
ENST00000519093 N/A N/A 2.346±0.00 N/A N/A N/A N/A N/A N/A 5.879±0.00 N/A 4.860±0.00 N/A N/A
ENST00000519416 N/A N/A N/A N/A N/A N/A N/A 1.441±0.00 N/A N/A N/A N/A N/A N/A
ENST00000520340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.350±0.00 N/A N/A N/A
ENST00000520615 N/A N/A 3.019±0.00 N/A 7.894±0.00 4.048±0.00 2.068±0.00 N/A 16.693±0.00 11.390±0.00 N/A 5.097±0.00 N/A N/A
ENST00000522955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.066±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0008D9 CIL_0008D9_0001 VISTA 8:38350004-38951124

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0007049 IEA cell cycle
GO:0008283 IEA cell proliferation
GO:0015630 IDA microtubule cytoskeleton
GO:0019904 IEA protein domain specific binding
GO:0021987 IEA cerebral cortex development
GO:0022008 IEA neurogenesis
GO:0022027 IEA interkinetic nuclear migration
GO:0032886 IEA regulation of microtubule-based process
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073753 tacc1 transforming, acidic coiled-coil containing protein 1 protein_coding Danio_rerio
ENSMUSG00000065954 Tacc1 transforming, acidic coiled-coil containing protein 1 protein_coding Mus_musculus

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