C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein S28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147586 MRPS28 9606 - 8:79918717-80030289 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276585 MRPS28-001 79918717-80030271 protein_coding
  ENST00000518271 MRPS28-012 79919125-80030232 protein_coding
  ENST00000518371 MRPS28-002 79957803-80003148 protein_coding
  ENST00000519120 MRPS28-008 79918988-80029964 protein_coding
  ENST00000519386 MRPS28-011 79918855-80029839 protein_coding
  ENST00000520946 MRPS28-009 79919032-80029974 protein_coding
  ENST00000521434 MRPS28-010 79918940-80029912 protein_coding
  ENST00000521605 MRPS28-007 79918966-80030289 protein_coding
  ENST00000522987 MRPS28-013 79958272-80030254 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276585ENST00000519120ENST00000519386ENST00000521434ENST00000521605
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276585 5.436±0.00 17.773±0.00 13.686±0.00 10.261±0.00 11.564±10.07 23.017±0.00 25.037±0.00 6.827±0.00 6.829±3.28 13.120±1.02 17.705±3.47 10.336±0.00
ENST00000519120 N/A N/A N/A N/A 8.692±0.00 21.476±0.00 N/A N/A 24.156±0.00 162.399±0.00 50.000±0.00 35.784±0.00
ENST00000519386 5.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.321±0.00 27.253±0.00
ENST00000521605 N/A N/A N/A N/A N/A N/A N/A N/A 5.071±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LP CIL_0008LP_0001 VISTA 8:79662126-80264511
CIL_0002OV CIL_0002OV_0001 CGP 8:79764010-80030289

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005763 TAS mitochondrial small ribosomal subunit
GO:0008150 ND biological_process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041538 mrps28 mitochondrial ribosomal protein S28 protein_coding Danio_rerio
ENSMUSG00000040269 Mrps28 mitochondrial ribosomal protein S28 protein_coding Mus_musculus

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