C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008LP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1305 VISTA 9606 8:79662126-80264511
GeneTranscriptPositionBiotype
ENSG00000076554 (TPD52)
tumor protein D52 		ENST00000379096 (TPD52-002) 80034868-80171558 protein_coding
ENST00000379097 (TPD52-006) 80036591-80080816 protein_coding
ENST00000448733 (TPD52-201) 80034872-80080831 protein_coding
ENST00000517427 (TPD52-008) 80036585-80080816 protein_coding
ENST00000517445 (TPD52-022) 80042620-80053353 retained_intron
ENST00000517462 (TPD52-004) 80036591-80080816 nonsense_mediated_decay
ENST00000518500 (TPD52-031) 80053046-80064552 retained_intron
ENST00000518517 (TPD52-029) 80038185-80171471 nonsense_mediated_decay
ENST00000518937 (TPD52-001) 80036100-80171659 protein_coding
ENST00000519250 (TPD52-032) 80051544-80231232 processed_transcript
ENST00000519303 (TPD52-003) 80037307-80171200 protein_coding
ENST00000520035 (TPD52-034) 80177993-80231172 processed_transcript
ENST00000520527 (TPD52-005) 80036585-80080816 protein_coding
ENST00000520741 (TPD52-019) 80064463-80080613 retained_intron
ENST00000520795 (TPD52-012) 80053279-80171383 protein_coding
ENST00000520877 (TPD52-014) 80037886-80051401 processed_transcript
ENST00000521241 (TPD52-021) 80038217-80171573 nonsense_mediated_decay
ENST00000521354 (TPD52-017) 80037883-80171556 nonsense_mediated_decay
ENST00000521561 (TPD52-013) 80064475-80158887 processed_transcript
ENST00000521618 (TPD52-015) 80037948-80042911 retained_intron
ENST00000522364 (TPD52-020) 80051478-80080614 retained_intron
ENST00000523193 (TPD52-016) 80037741-80051859 retained_intron
ENST00000523319 (TPD52-011) 80037866-80064670 retained_intron
ENST00000523395 (TPD52-009) 80037677-80051416 processed_transcript
ENST00000523564 (TPD52-035) 80177657-80218530 processed_transcript
ENST00000523753 (TPD52-028) 80044170-80171508 nonsense_mediated_decay
ENST00000523783 (TPD52-018) 80066892-80080396 processed_transcript
ENST00000524194 (TPD52-024) 80038202-80053430 retained_intron
ENST00000602950 (TPD52-033) 80183021-80231219 processed_transcript
ENSG00000104435 (STMN2)
stathmin 2 		ENST00000220876 (STMN2-001) 79610814-79666175 protein_coding
ENST00000518111 (STMN2-008) 79611152-79665007 protein_coding
ENST00000518491 (STMN2-007) 79611735-79664881 protein_coding
ENSG00000147586 (MRPS28)
mitochondrial ribosomal protein S28 		ENST00000276585 (MRPS28-001) 79918717-80030271 protein_coding
ENST00000518271 (MRPS28-012) 79919125-80030232 protein_coding
ENST00000518371 (MRPS28-002) 79957803-80003148 protein_coding
ENST00000519120 (MRPS28-008) 79918988-80029964 protein_coding
ENST00000519386 (MRPS28-011) 79918855-80029839 protein_coding
ENST00000520946 (MRPS28-009) 79919032-80029974 protein_coding
ENST00000521434 (MRPS28-010) 79918940-80029912 protein_coding
ENST00000521605 (MRPS28-007) 79918966-80030289 protein_coding
ENST00000522987 (MRPS28-013) 79958272-80030254 processed_transcript
ENSG00000164683 (HEY1)
hes-related family bHLH transcription factor with YRPW motif 1 		ENST00000337919 (HEY1-009) 79764013-79767857 protein_coding
ENST00000354724 (HEY1-001) 79764010-79767863 protein_coding
ENST00000435063 (HEY1-003) 79764494-79766493 processed_transcript
ENST00000518733 (HEY1-006) 79765431-79767472 protein_coding
ENST00000519075 (HEY1-005) 79766934-79767760 retained_intron
ENST00000521111 (HEY1-008) 79766767-79767784 retained_intron
ENST00000523531 (HEY1-007) 79767010-79767857 retained_intron
ENST00000523976 (HEY1-004) 79764720-79766475 protein_coding
ENSG00000241550 (RN7SL41P)
RNA, 7SL, cytoplasmic 41, pseudogene 		ENST00000476144 (RN7SL41P-201) 80204606-80204902 misc_RNA
ENSG00000249328 (RP11-26J3.1)
 ENST00000502766 (RP11-26J3.1-001) 79769372-79871737 lincRNA
ENST00000517365 (RP11-26J3.1-002) 79820569-79871759 lincRNA
ENSG00000254205 (RP11-92K15.1)
 ENST00000522494 (RP11-92K15.1-001) 80122852-80127670 antisense
ENSG00000272138 (RP11-27N21.3)
 ENST00000607172 (RP11-27N21.3-001) 79768142-79802842 lincRNA
ENST00000607754 (RP11-27N21.3-002) 79783729-79802799 lincRNA
ENSG00000272264 (RP11-92K15.3)
 ENST00000607017 (RP11-92K15.3-001) 80032724-80033300 lincRNA
ENSG00000272518 (RP11-26J3.3)
 ENST00000606512 (RP11-26J3.3-001) 79956465-79957381 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0008LP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1305 VISTA 10090 3:8565055-9167293
GeneTranscriptPositionBiotype
ENSMUSG00000027506 (Tpd52)
tumor protein D52 		ENSMUST00000063496 (Tpd52-011) 8930956-9004439 protein_coding
ENSMUST00000091354 (Tpd52-002) 8929598-8964046 protein_coding
ENSMUST00000091355 (Tpd52-003) 8928626-9004478 protein_coding
ENSMUST00000094381 (Tpd52-008) 8930788-8964048 protein_coding
ENSMUST00000120143 (Tpd52-001) 8928626-9004723 protein_coding
ENSMUST00000121038 (Tpd52-006) 8930892-8993890 protein_coding
ENSMUST00000124956 (Tpd52-007) 8944696-8988636 protein_coding
ENSMUST00000129736 (Tpd52-010) 8947504-9004437 processed_transcript
ENSMUST00000134788 (Tpd52-004) 8931139-9004478 protein_coding
ENSMUST00000145905 (Tpd52-009) 8931064-8962253 protein_coding
ENSMUST00000155450 (Tpd52-005) 8947566-9004478 nonsense_mediated_decay
ENSMUSG00000040269 (Mrps28)
mitochondrial ribosomal protein S28 		ENSMUST00000042148 (Mrps28-001) 8802146-8923918 protein_coding
ENSMUSG00000040289 (Hey1)
hairy/enhancer-of-split related with YRPW motif 1 		ENSMUST00000042412 (Hey1-201) 8663362-8667039 protein_coding
ENSMUSG00000081594 (Gm15467)
predicted gene 15467 		ENSMUST00000120582 (Gm15467-001) 8881199-8881643 processed_pseudogene
ENSMUSG00000081657 (Gm15466)
predicted gene 15466 		ENSMUST00000122299 (Gm15466-001) 8882238-8882570 processed_pseudogene
ENSMUSG00000098047 (Gm18822)
predicted gene, 18822 		ENSMUST00000182857 (Gm18822-001) 8615275-8616504 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008LP_0001ENSG00000076554ENST00000379096ENST00000379097ENST00000518937ENST00000520527ENST00000520741ENSG00000104435ENST00000220876ENST00000518111ENST00000518491ENSG00000147586ENST00000276585ENST00000519120ENST00000519386ENST00000521434ENST00000521605ENSG00000164683ENST00000337919ENST00000354724ENST00000435063ENST00000518733ENST00000521111ENST00000523531ENSG00000241550ENST00000476144ENSG00000249328ENST00000502766ENST00000517365ENSG00000254205ENST00000522494ENSG00000272138ENST00000607172ENST00000607754ENSG00000272264ENST00000607017ENSG00000272518ENST00000606512CIL_0008LP_0002ENSMUSG00000027506ENSMUST00000063496ENSMUST00000091354ENSMUST00000091355ENSMUST00000094381ENSMUST00000120143ENSMUST00000121038ENSMUST00000134788ENSMUSG00000040269ENSMUST00000042148ENSMUSG00000040289ENSMUST00000042412ENSMUSG00000081594ENSMUST00000120582ENSMUSG00000081657ENSMUST00000122299ENSMUSG00000098047ENSMUST00000182857
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076554 ENST00000379096 0.860±0.00 N/A N/A 5.880±2.36 3.873±2.26 4.366±1.20 N/A 3.383±1.63 1.218±0.00 2.125±0.45 N/A 2.391±1.75 1.695±0.31 1.264±0.00
ENST00000379097 1.412±0.00 7.749±0.00 4.429±0.00 N/A 11.029±7.36 13.242±4.63 4.025±0.00 20.301±0.00 7.159±5.60 3.760±0.00 1.958±0.00 6.084±3.97 6.914±0.35 2.034±0.00
ENST00000448733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518937 N/A N/A N/A 14.160±0.27 N/A 9.549±0.00 0.668±0.00 3.920±0.00 2.170±0.00 4.983±0.00 N/A 11.422±9.97 4.495±2.37 1.675±0.00
ENST00000519250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520527 N/A N/A N/A 16.997±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520741 N/A N/A N/A N/A N/A 114.815±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104435 ENST00000220876 0.032±0.00 N/A N/A 85.543±0.00 1.690±0.51 4.783±2.51 N/A N/A 0.028±0.00 N/A N/A 0.176±0.13 0.248±0.10 0.231±0.00
ENST00000518111 N/A N/A N/A N/A N/A N/A 0.055±0.04 N/A N/A N/A N/A N/A 0.069±0.00 0.142±0.06
ENST00000518491 N/A N/A 0.150±0.00 59.588±0.00 1.094±0.00 N/A N/A 0.072±0.00 0.196±0.14 0.464±0.00 N/A 0.446±0.00 0.107±0.00 0.464±0.34
ENSG00000147586 ENST00000276585 5.436±0.00 17.773±0.00 N/A N/A 13.686±0.00 10.261±0.00 11.564±10.07 23.017±0.00 25.037±0.00 6.827±0.00 6.829±3.28 13.120±1.02 17.705±3.47 10.336±0.00
ENST00000518271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519120 N/A N/A N/A N/A N/A N/A 8.692±0.00 21.476±0.00 N/A N/A 24.156±0.00 162.399±0.00 50.000±0.00 35.784±0.00
ENST00000519386 5.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.321±0.00 27.253±0.00
ENST00000521605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.071±0.00 N/A N/A N/A
ENST00000522987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164683 ENST00000337919 N/A 1.267±0.00 N/A 2.045±1.42 2.370±0.00 N/A N/A N/A N/A 1.393±0.44 N/A 0.357±0.00 1.625±0.00 N/A
ENST00000354724 13.259±0.00 3.501±0.00 N/A 7.467±3.04 3.347±0.00 2.727±2.48 3.727±3.34 2.441±0.00 0.279±0.00 4.792±0.00 3.335±3.09 2.710±2.38 8.842±2.06 6.090±2.01
ENST00000435063 N/A N/A N/A N/A 0.677±0.00 N/A N/A N/A N/A N/A 2.194±0.00 N/A 3.126±0.00 1.549±0.00
ENST00000518733 N/A N/A 1.148±0.00 N/A N/A 0.272±0.00 0.616±0.00 N/A 1.655±0.00 0.786±0.00 1.104±0.00 0.595±0.00 N/A N/A
ENST00000519075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521111 N/A N/A N/A N/A 2.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523531 N/A N/A N/A N/A N/A 0.719±0.00 0.457±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000523976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241550 ENST00000476144 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.264±0.00 N/A N/A N/A N/A
ENSG00000249328 ENST00000502766 0.029±0.00 0.139±0.00 N/A N/A 0.064±0.00 0.065±0.00 0.029±0.00 0.032±0.00 0.014±0.00 N/A N/A 0.049±0.00 0.023±0.00 0.187±0.03
ENST00000517365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.174±0.00
ENSG00000254205 ENST00000522494 N/A 0.156±0.00 N/A 0.281±0.00 0.150±0.00 N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A
ENSG00000272138 ENST00000607172 N/A 0.168±0.00 N/A 0.164±0.00 N/A 0.203±0.00 N/A N/A N/A N/A N/A 0.281±0.15 0.219±0.00 0.257±0.00
ENST00000607754 N/A N/A N/A 0.315±0.23 N/A N/A 0.067±0.00 0.100±0.00 N/A 0.339±0.00 0.139±0.00 0.107±0.04 N/A 0.849±0.29
ENSG00000272264 ENST00000607017 0.036±0.00 0.577±0.00 N/A 0.180±0.00 0.342±0.30 0.384±0.35 0.072±0.00 0.158±0.00 0.309±0.00 0.333±0.00 N/A 1.154±0.86 0.611±0.16 N/A
ENSG00000272518 ENST00000606512 0.898±0.00 1.478±0.00 1.234±0.00 0.465±0.30 0.580±0.02 0.449±0.20 0.347±0.05 0.697±0.36 0.700±0.11 0.769±0.57 0.044±0.00 1.104±0.62 0.280±0.20 0.349±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027506 ENSMUST00000063496 N/A N/A N/A 13.675±0.00 N/A N/A N/A N/A N/A N/A 4.356±0.34 12.439±0.00 16.767±4.60 1.117±0.00
ENSMUST00000091354 6.365±2.38 4.426±1.20 22.586±2.25 4.759±1.55 8.919±4.69 36.224±7.51 4.608±0.13 26.740±2.99 2.581±1.32 11.846±2.97 3.919±1.66 10.782±4.25 19.445±7.49 2.423±0.12
ENSMUST00000091355 N/A 2.882±0.20 N/A 1.526±0.08 N/A N/A N/A N/A 1.036±0.00 N/A 0.910±0.06 2.835±0.86 2.759±0.50 N/A
ENSMUST00000094381 N/A N/A N/A N/A N/A 18.723±2.89 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120143 3.183±1.96 8.752±4.80 6.629±2.28 1.104±0.09 6.643±3.00 40.077±7.60 1.042±0.37 11.563±2.41 2.555±0.60 9.860±1.27 1.136±0.32 10.785±2.52 9.153±5.77 0.969±0.38
ENSMUST00000121038 N/A 6.485±1.24 N/A N/A N/A N/A N/A N/A 1.676±0.14 N/A N/A N/A N/A N/A
ENSMUST00000124956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.824±0.00
ENSMUST00000145905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040269 ENSMUST00000042148 27.590±3.26 61.887±5.59 27.441±5.21 13.898±2.55 28.546±7.03 24.966±1.28 43.274±5.03 30.184±1.62 41.581±15.59 21.151±1.78 58.928±4.60 28.951±3.81 31.348±13.37 9.288±2.43
ENSMUSG00000040289 ENSMUST00000042412 9.395±2.77 3.821±1.14 2.787±0.00 10.762±2.84 14.308±5.49 2.703±0.57 4.465±1.04 1.284±0.13 0.494±0.28 50.835±9.10 1.621±0.33 8.594±3.24 0.893±0.24 2.014±0.91
ENSMUSG00000081594 ENSMUST00000120582 0.254±0.00 N/A 0.147±0.00 0.144±0.03 N/A 0.485±0.29 N/A 0.288±0.13 0.081±0.03 0.532±0.00 0.151±0.00 0.430±0.20 0.216±0.03 0.320±0.17
ENSMUSG00000081657 ENSMUST00000122299 0.323±0.09 N/A 0.468±0.09 0.837±0.00 N/A N/A 0.214±0.00 N/A 0.319±0.24 0.255±0.02 N/A 0.995±0.35 0.561±0.32 0.308±0.10
ENSMUSG00000098047 ENSMUST00000182857 N/A N/A N/A 0.027±0.01 0.160±0.15 N/A N/A 0.036±0.00 N/A 0.070±0.01 N/A 0.080±0.04 0.010±0.00 N/A

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