C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (zinc transporter), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147804 SLC39A4 9606 - 8:144409742-144416895 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276833 SLC39A4-002 144412414-144416512 protein_coding
  ENST00000301305 SLC39A4-001 144412414-144416895 protein_coding
  ENST00000526658 SLC39A4-010 144414866-144416819 protein_coding
  ENST00000527148 SLC39A4-009 144409742-144413571 processed_transcript
  ENST00000529462 SLC39A4-005 144410395-144413585 retained_intron
  ENST00000530807 SLC39A4-007 144412414-144413569 processed_transcript
  ENST00000531013 SLC39A4-006 144412415-144413591 processed_transcript
  ENST00000531789 SLC39A4-008 144413340-144414081 processed_transcript
  ENST00000532718 SLC39A4-004 144412414-144413586 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276833ENST00000301305ENST00000527148ENST00000529462ENST00000530807ENST00000531013ENST00000532718
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276833 N/A N/A N/A N/A N/A N/A N/A 4.340±0.00 N/A N/A N/A 2.120±0.00 N/A 0.667±0.00
ENST00000301305 N/A N/A N/A 0.805±0.00 0.052±0.00 0.669±0.00 N/A 6.678±0.00 1.051±0.00 1.145±0.51 N/A 4.667±1.69 3.830±1.22 N/A
ENST00000527148 N/A N/A N/A 2.258±0.00 2.150±0.00 N/A 0.565±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000529462 N/A 0.587±0.00 0.078±0.00 N/A 0.207±0.16 0.354±0.22 N/A N/A 0.048±0.00 0.285±0.00 0.074±0.00 N/A N/A 0.433±0.16
ENST00000530807 3.417±0.00 16.344±0.00 1.052±0.00 3.843±0.00 3.611±0.00 6.029±0.00 0.451±0.00 6.693±5.29 N/A 2.859±0.00 3.240±0.00 19.580±19.20 7.474±0.00 5.619±0.22
ENST00000531013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.546±0.00 0.684±0.00 N/A N/A
ENST00000532718 2.112±0.00 8.004±0.00 N/A 1.927±0.00 3.336±2.68 5.348±4.21 1.929±0.00 12.239±0.00 5.915±0.00 6.123±0.00 0.846±0.00 31.196±24.84 14.078±4.55 8.451±2.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026S CIL_00026S_0001 CGP 8:144393229-144416895

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005385 IEA zinc ion transmembrane transporter activity
GO:0005768 IEA endosome
GO:0005886 IDA plasma membrane
GO:0006829 IEA zinc ion transport
GO:0006882 IEA cellular zinc ion homeostasis
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016324 IEA apical plasma membrane
GO:0030001 IEA metal ion transport
GO:0034224 IEA cellular response to zinc ion starvation
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0071577 IEA zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059361 slc39a4 solute carrier family 39 (zinc transporter), member 4 protein_coding Danio_rerio
ENSMUSG00000063354 Slc39a4 solute carrier family 39 (zinc transporter), member 4 protein_coding Mus_musculus

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