C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301305 SLC39A4-001 ENSG00000147804 9606 - 8:144412414-144416895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaENST00000301305
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000301305 0.805±0.00 0.052±0.00 0.669±0.00 6.678±0.00 1.051±0.00 1.145±0.51 4.667±1.69 3.830±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026S CIL_00026S_0001 CGP 8:144393229-144416895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IEA zinc ion transmembrane transporter activity
GO:0005768 IEA endosome
GO:0005886 IDA plasma membrane
GO:0006829 IEA zinc ion transport
GO:0006882 IEA cellular zinc ion homeostasis
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016324 IEA apical plasma membrane
GO:0030001 IEA metal ion transport
GO:0034224 IEA cellular response to zinc ion starvation
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 TAS:IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0071577 IEA zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073428 Slc39a4-201 protein_coding Mus_musculus 0 523

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