C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00026S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000071894-ENSG00000147804 CGP 9606 8:144393229-144416895
GeneTranscriptPositionBiotype
ENSG00000071894 (CPSF1)
cleavage and polyadenylation specific factor 1, 160kDa 		ENST00000526271 (CPSF1-005) 144393699-144394716 retained_intron
ENST00000527827 (CPSF1-009) 144396015-144396730 retained_intron
ENST00000527916 (CPSF1-011) 144398523-144399346 retained_intron
ENST00000529288 (CPSF1-007) 144395313-144395979 retained_intron
ENST00000531042 (CPSF1-015) 144394769-144409181 nonsense_mediated_decay
ENST00000531480 (CPSF1-010) 144393229-144394416 retained_intron
ENST00000531727 (CPSF1-012) 144393229-144394441 protein_coding
ENST00000532560 (CPSF1-006) 144399800-144400986 retained_intron
ENST00000532725 (CPSF1-004) 144393565-144394237 retained_intron
ENST00000532935 (CPSF1-013) 144393883-144394761 protein_coding
ENST00000533492 (CPSF1-008) 144399220-144399807 retained_intron
ENST00000616140 (CPSF1-201) 144393231-144409349 protein_coding
ENST00000620219 (CPSF1-001) 144393318-144409288 protein_coding
ENST00000622776 (CPSF1-003) 144399809-144401675 retained_intron
ENSG00000147804 (SLC39A4)
solute carrier family 39 (zinc transporter), member 4 		ENST00000276833 (SLC39A4-002) 144412414-144416512 protein_coding
ENST00000301305 (SLC39A4-001) 144412414-144416895 protein_coding
ENST00000526658 (SLC39A4-010) 144414866-144416819 protein_coding
ENST00000527148 (SLC39A4-009) 144409742-144413571 processed_transcript
ENST00000529462 (SLC39A4-005) 144410395-144413585 retained_intron
ENST00000530807 (SLC39A4-007) 144412414-144413569 processed_transcript
ENST00000531013 (SLC39A4-006) 144412415-144413591 processed_transcript
ENST00000531789 (SLC39A4-008) 144413340-144414081 processed_transcript
ENST00000532718 (SLC39A4-004) 144412414-144413586 processed_transcript
ENSG00000173137 (ADCK5)
aarF domain containing kinase 5 		ENST00000308860 (ADCK5-001) 144374052-144393236 protein_coding
ENST00000525136 (ADCK5-004) 144374055-144379421 processed_transcript
ENST00000526231 (ADCK5-009) 144373837-144391710 processed_transcript
ENST00000526833 (ADCK5-005) 144374076-144391055 nonsense_mediated_decay
ENST00000529654 (ADCK5-003) 144374046-144393242 nonsense_mediated_decay
ENST00000532190 (ADCK5-006) 144374061-144390884 retained_intron
ENST00000533715 (ADCK5-007) 144374042-144391276 nonsense_mediated_decay
ENST00000534714 (ADCK5-008) 144373101-144391064 processed_transcript
CIL_00026S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034022-ENSMUSG00000063354 CGP 10090 15:76595809-76616852
GeneTranscriptPositionBiotype
ENSMUSG00000034022 (Cpsf1)
cleavage and polyadenylation specific factor 1 		ENSMUST00000071898 (Cpsf1-201) 76595809-76607591 protein_coding
ENSMUSG00000063354 (Slc39a4)
solute carrier family 39 (zinc transporter), member 4 		ENSMUST00000073428 (Slc39a4-201) 76612385-76616852 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00026S_0001ENSG00000071894ENST00000526271ENST00000527827ENST00000527916ENST00000529288ENST00000531042ENST00000531480ENST00000531727ENST00000532560ENST00000532725ENST00000532935ENST00000533492ENST00000616140ENST00000620219ENST00000622776ENSG00000147804ENST00000276833ENST00000301305ENST00000526658ENST00000527148ENST00000529462ENST00000530807ENST00000531013ENST00000531789ENST00000532718ENSG00000173137ENST00000308860ENST00000525136ENST00000526231ENST00000526833ENST00000529654ENST00000532190ENST00000533715ENST00000534714CIL_00026S_0002ENSMUSG00000034022ENSMUST00000071898ENSMUSG00000063354ENSMUST00000073428
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00026S_0001ENSG00000071894ENST00000526271ENST00000527916ENST00000531042ENST00000532935ENST00000616140ENST00000620219ENSG00000147804ENST00000276833ENST00000301305ENST00000527148ENST00000529462ENST00000530807ENST00000531013ENST00000532718ENSG00000173137ENST00000308860ENST00000534714CIL_00026S_0002ENSMUSG00000034022ENSMUST00000071898ENSMUSG00000063354ENSMUST00000073428
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000071894 ENST00000526271 N/A N/A N/A 1.387±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527916 N/A N/A 1.888±0.00 N/A N/A 5.447±0.00 N/A N/A N/A N/A N/A 4.550±0.00 N/A N/A
ENST00000529288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531042 N/A N/A 1.304±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.815±0.00 N/A N/A N/A
ENST00000533492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616140 5.977±0.00 N/A 0.953±0.00 0.280±0.00 3.557±2.92 5.524±4.70 1.695±0.92 2.120±0.71 1.102±0.00 3.745±0.00 14.591±0.00 20.299±10.63 14.195±1.52 28.332±5.51
ENST00000620219 6.116±0.00 12.762±0.00 N/A 2.843±2.04 3.967±1.39 2.266±0.46 2.925±0.00 2.261±1.58 3.211±1.96 3.050±2.10 0.455±0.00 9.529±0.00 N/A 14.193±2.28
ENST00000622776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147804 ENST00000276833 N/A N/A N/A N/A N/A N/A N/A 4.340±0.00 N/A N/A N/A 2.120±0.00 N/A 0.667±0.00
ENST00000301305 N/A N/A N/A 0.805±0.00 0.052±0.00 0.669±0.00 N/A 6.678±0.00 1.051±0.00 1.145±0.51 N/A 4.667±1.69 3.830±1.22 N/A
ENST00000526658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527148 N/A N/A N/A 2.258±0.00 2.150±0.00 N/A 0.565±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000529462 N/A 0.587±0.00 0.078±0.00 N/A 0.207±0.16 0.354±0.22 N/A N/A 0.048±0.00 0.285±0.00 0.074±0.00 N/A N/A 0.433±0.16
ENST00000530807 3.417±0.00 16.344±0.00 1.052±0.00 3.843±0.00 3.611±0.00 6.029±0.00 0.451±0.00 6.693±5.29 N/A 2.859±0.00 3.240±0.00 19.580±19.20 7.474±0.00 5.619±0.22
ENST00000531013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.546±0.00 0.684±0.00 N/A N/A
ENST00000531789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532718 2.112±0.00 8.004±0.00 N/A 1.927±0.00 3.336±2.68 5.348±4.21 1.929±0.00 12.239±0.00 5.915±0.00 6.123±0.00 0.846±0.00 31.196±24.84 14.078±4.55 8.451±2.34
ENSG00000173137 ENST00000308860 N/A N/A N/A 0.643±0.00 N/A N/A N/A 1.734±0.00 N/A N/A 0.344±0.00 N/A N/A N/A
ENST00000525136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.835±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034022 ENSMUST00000071898 25.224±7.79 39.878±1.63 20.338±0.97 28.419±8.65 26.191±6.31 26.221±1.58 11.129±0.84 18.175±1.79 19.056±3.19 26.046±1.78 6.590±0.65 36.250±7.62 16.259±3.30 20.374±5.76
ENSMUSG00000063354 ENSMUST00000073428 20.415±20.21 0.912±0.38 0.722±0.01 0.078±0.03 1.907±0.85 86.249±2.01 0.571±0.48 0.443±0.09 26.428±13.67 46.254±4.87 0.050±0.03 25.588±8.42 30.749±20.90 0.797±0.00

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