C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 9 open reading frame 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148120 C9orf3 9606 + 9:94726701-95087218 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277198 C9orf3-004 94726701-94931833 protein_coding
  ENST00000297979 C9orf3-002 94726712-95087159 protein_coding
  ENST00000375315 C9orf3-201 94759649-95087218 protein_coding
  ENST00000424143 C9orf3-006 94760315-95080894 protein_coding
  ENST00000427193 C9orf3-003 94760162-94763411 protein_coding
  ENST00000428313 C9orf3-008 94760438-95087159 protein_coding
  ENST00000445181 C9orf3-015 95004996-95083035 protein_coding
  ENST00000451893 C9orf3-018 94955946-95006200 protein_coding
  ENST00000460573 C9orf3-019 94967784-95060919 processed_transcript
  ENST00000462125 C9orf3-011 94921209-95080756 processed_transcript
  ENST00000463372 C9orf3-001 95005097-95087052 processed_transcript
  ENST00000468164 C9orf3-007 95056270-95086918 processed_transcript
  ENST00000471978 C9orf3-014 95004980-95086731 processed_transcript
  ENST00000473778 C9orf3-009 94921204-94933671 processed_transcript
  ENST00000478473 C9orf3-016 95005008-95086841 nonsense_mediated_decay
  ENST00000478603 C9orf3-013 95003917-95060987 processed_transcript
  ENST00000479161 C9orf3-010 94921260-95082592 processed_transcript
  ENST00000482056 C9orf3-020 95018891-95022285 processed_transcript
  ENST00000488186 C9orf3-012 94920215-94935356 processed_transcript
  ENST00000489318 C9orf3-021 94760306-94773255 processed_transcript
  ENST00000489562 C9orf3-005 95048768-95082728 processed_transcript
  ENST00000496567 C9orf3-017 95005013-95022277 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277198ENST00000297979ENST00000375315ENST00000463372ENST00000471978ENST00000478603ENST00000482056ENST00000496567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277198 N/A N/A 3.814±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.984±0.00 N/A 2.631±0.00
ENST00000297979 N/A N/A N/A N/A N/A N/A N/A 0.730±0.00 N/A N/A N/A N/A 1.856±0.00 3.420±1.25
ENST00000375315 N/A N/A N/A 1.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463372 4.281±0.00 N/A N/A 10.282±0.00 6.575±0.00 21.832±0.00 18.625±0.00 11.351±6.23 14.057±0.00 23.051±0.00 5.860±2.12 25.887±4.43 17.041±5.97 20.451±0.00
ENST00000471978 N/A N/A N/A N/A N/A N/A 44.090±0.00 N/A N/A N/A N/A 75.661±0.00 16.403±0.00 N/A
ENST00000478603 N/A N/A N/A N/A N/A N/A N/A 3.511±0.00 N/A N/A N/A N/A N/A N/A
ENST00000482056 N/A N/A N/A N/A N/A N/A N/A 1.686±0.00 N/A 4.655±0.00 4.242±0.00 N/A N/A N/A
ENST00000496567 N/A 3.626±0.00 5.296±0.00 2.463±0.00 2.283±0.00 3.906±0.00 N/A 3.903±0.72 2.336±0.00 8.160±0.00 1.327±0.00 N/A 4.760±1.04 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J6 CIL_0002J6_0001 CGP 9:94603133-95087218
CIL_0002J5 CIL_0002J5_0001 CGP 9:94726701-95317709

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004177 IDA aminopeptidase activity
GO:0005488 IEA binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006508 IEA:IDA proteolysis
GO:0008237 IDA:IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0019370 IEA leukotriene biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068461 C8H9orf3 chromosome 9 open reading frame 3 protein_coding Danio_rerio
ENSMUSG00000021458 2010111I01Rik RIKEN cDNA 2010111I01 gene protein_coding Mus_musculus

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