C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002J5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148120-ENSG00000158169 CGP 9606 9:94726701-95317709
GeneTranscriptPositionBiotype
ENSG00000148120 (C9orf3)
chromosome 9 open reading frame 3 		ENST00000277198 (C9orf3-004) 94726701-94931833 protein_coding
ENST00000297979 (C9orf3-002) 94726712-95087159 protein_coding
ENST00000375315 (C9orf3-201) 94759649-95087218 protein_coding
ENST00000424143 (C9orf3-006) 94760315-95080894 protein_coding
ENST00000427193 (C9orf3-003) 94760162-94763411 protein_coding
ENST00000428313 (C9orf3-008) 94760438-95087159 protein_coding
ENST00000445181 (C9orf3-015) 95004996-95083035 protein_coding
ENST00000451893 (C9orf3-018) 94955946-95006200 protein_coding
ENST00000460573 (C9orf3-019) 94967784-95060919 processed_transcript
ENST00000462125 (C9orf3-011) 94921209-95080756 processed_transcript
ENST00000463372 (C9orf3-001) 95005097-95087052 processed_transcript
ENST00000468164 (C9orf3-007) 95056270-95086918 processed_transcript
ENST00000471978 (C9orf3-014) 95004980-95086731 processed_transcript
ENST00000473778 (C9orf3-009) 94921204-94933671 processed_transcript
ENST00000478473 (C9orf3-016) 95005008-95086841 nonsense_mediated_decay
ENST00000478603 (C9orf3-013) 95003917-95060987 processed_transcript
ENST00000479161 (C9orf3-010) 94921260-95082592 processed_transcript
ENST00000482056 (C9orf3-020) 95018891-95022285 processed_transcript
ENST00000488186 (C9orf3-012) 94920215-94935356 processed_transcript
ENST00000489318 (C9orf3-021) 94760306-94773255 processed_transcript
ENST00000489562 (C9orf3-005) 95048768-95082728 processed_transcript
ENST00000496567 (C9orf3-017) 95005013-95022277 processed_transcript
ENSG00000158169 (FANCC)
Fanconi anemia, complementation group C 		ENST00000289081 (FANCC-001) 95099054-95317702 protein_coding
ENST00000375305 (FANCC-002) 95099055-95317225 protein_coding
ENST00000433829 (FANCC-004) 95172043-95316894 protein_coding
ENST00000464627 (FANCC-006) 95107101-95126918 processed_transcript
ENST00000464653 (FANCC-003) 95114135-95127420 processed_transcript
ENST00000474949 (FANCC-005) 95171116-95317709 processed_transcript
ENST00000477942 (FANCC-008) 95109597-95135543 processed_transcript
ENST00000480712 (FANCC-009) 95107348-95135373 processed_transcript
ENST00000490972 (FANCC-201) 95110228-95317709 protein_coding
ENST00000493098 (FANCC-010) 95145270-95150033 processed_transcript
ENSG00000207864 (MIR27B)
microRNA 27b 		ENST00000385129 (MIR27B-201) 95085435-95085542 miRNA
ENSG00000223849 (RP11-80I15.1)
 ENST00000433735 (RP11-80I15.1-001) 95123521-95123868 processed_pseudogene
ENSG00000224764 (RP11-54O15.3)
 ENST00000439872 (RP11-54O15.3-001) 94928551-94934946 antisense
ENSG00000230221 (RP11-173G21.1)
 ENST00000445995 (RP11-173G21.1-001) 95292338-95294810 processed_pseudogene
ENSG00000230815 (RP11-49O14.3)
 ENST00000437846 (RP11-49O14.3-001) 94824272-94824773 sense_intronic
ENSG00000236095 (RP11-49O14.2)
 ENST00000416455 (RP11-49O14.2-001) 94900429-94904754 sense_intronic
ENSG00000251884 (RNA5SP288)
RNA, 5S ribosomal pseudogene 288 		ENST00000516075 (RNA5SP288-201) 95142449-95142541 rRNA
ENSG00000252153 (MIR2278)
microRNA 2278 		ENST00000516344 (MIR2278-201) 94809962-94810057 miRNA
CIL_0002J5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021458-ENSMUSG00000021461 CGP 10090 13:63014934-63497278
GeneTranscriptPositionBiotype
ENSMUSG00000021458 (2010111I01Rik)
RIKEN cDNA 2010111I01 gene 		ENSMUST00000021911 (2010111I01Rik-201) 63015167-63302284 protein_coding
ENSMUST00000091560 (2010111I01Rik-202) 63014934-63299656 protein_coding
ENSMUST00000159152 (2010111I01Rik-002) 63282142-63326096 protein_coding
ENSMUSG00000065475 (Mir27b)
microRNA 27b 		ENSMUST00000083541 (Mir27b-201) 63300700-63300796 miRNA
ENSMUSG00000065599 (Mir23b)
microRNA 23b 		ENSMUST00000083665 (Mir23b-201) 63300472-63300568 miRNA
ENSMUSG00000089854 (Gm16133)
predicted gene 16133 		ENSMUST00000160065 (Gm16133-002) 63333210-63339956 antisense
ENSMUST00000160278 (Gm16133-001) 63333137-63339959 antisense
ENSMUSG00000089868 (Gm16134)
predicted gene 16134 		ENSMUST00000161714 (Gm16134-001) 63446930-63447265 processed_pseudogene
ENSMUSG00000090232 (Gm16132)
predicted gene 16132 		ENSMUST00000159296 (Gm16132-001) 63376761-63381045 sense_intronic
ENSMUSG00000092741 (Mir3074-1)
microRNA 3074-1 		ENSMUST00000175000 (Mir3074-1-201) 63301180-63301296 miRNA
ENSMUSG00000097242 (Gm16907)
predicted gene, 16907 		ENSMUST00000180734 (Gm16907-201) 63289601-63297147 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002J5_0001ENSG00000148120ENST00000277198ENST00000297979ENST00000375315ENST00000463372ENST00000471978ENST00000478603ENST00000482056ENST00000496567ENSG00000158169ENST00000289081ENST00000464627ENST00000490972ENSG00000207864ENST00000385129ENSG00000223849ENST00000433735ENSG00000224764ENST00000439872ENSG00000230221ENST00000445995ENSG00000230815ENST00000437846ENSG00000236095ENST00000416455ENSG00000251884ENST00000516075ENSG00000252153ENST00000516344CIL_0002J5_0002ENSMUSG00000021458ENSMUST00000021911ENSMUST00000091560ENSMUSG00000065475ENSMUST00000083541ENSMUSG00000065599ENSMUST00000083665ENSMUSG00000089854ENSMUST00000160065ENSMUST00000160278ENSMUSG00000089868ENSMUST00000161714ENSMUSG00000090232ENSMUST00000159296ENSMUSG00000092741ENSMUST00000175000ENSMUSG00000097242ENSMUST00000180734
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148120 ENST00000277198 N/A N/A 3.814±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.984±0.00 N/A 2.631±0.00
ENST00000297979 N/A N/A N/A N/A N/A N/A N/A 0.730±0.00 N/A N/A N/A N/A 1.856±0.00 3.420±1.25
ENST00000375315 N/A N/A N/A 1.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463372 4.281±0.00 N/A N/A 10.282±0.00 6.575±0.00 21.832±0.00 18.625±0.00 11.351±6.23 14.057±0.00 23.051±0.00 5.860±2.12 25.887±4.43 17.041±5.97 20.451±0.00
ENST00000468164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471978 N/A N/A N/A N/A N/A N/A 44.090±0.00 N/A N/A N/A N/A 75.661±0.00 16.403±0.00 N/A
ENST00000473778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478603 N/A N/A N/A N/A N/A N/A N/A 3.511±0.00 N/A N/A N/A N/A N/A N/A
ENST00000479161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482056 N/A N/A N/A N/A N/A N/A N/A 1.686±0.00 N/A 4.655±0.00 4.242±0.00 N/A N/A N/A
ENST00000488186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496567 N/A 3.626±0.00 5.296±0.00 2.463±0.00 2.283±0.00 3.906±0.00 N/A 3.903±0.72 2.336±0.00 8.160±0.00 1.327±0.00 N/A 4.760±1.04 N/A
ENSG00000158169 ENST00000289081 0.438±0.00 N/A N/A N/A 0.767±0.00 N/A 0.297±0.00 N/A N/A 1.099±0.00 N/A 0.925±0.05 0.747±0.02 3.164±0.28
ENST00000375305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.770±0.00
ENST00000464653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490972 N/A 0.297±0.00 N/A N/A 0.223±0.00 N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207864 ENST00000385129 N/A N/A N/A N/A 0.430±0.00 N/A 0.590±0.00 N/A N/A N/A N/A N/A 2.092±0.00 N/A
ENSG00000223849 ENST00000433735 N/A 0.352±0.00 N/A 0.158±0.00 2.237±0.00 2.077±0.00 0.359±0.00 0.355±0.00 0.486±0.00 0.418±0.00 N/A 0.786±0.46 0.135±0.03 0.199±0.02
ENSG00000224764 ENST00000439872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.555±0.00
ENSG00000230221 ENST00000445995 0.021±0.00 0.022±0.00 0.038±0.00 0.028±0.00 0.080±0.00 0.149±0.00 N/A N/A N/A 0.284±0.00 0.005±0.00 0.031±0.02 0.013±0.00 0.064±0.05
ENSG00000230815 ENST00000437846 N/A N/A 2.034±0.00 0.059±0.00 1.700±0.00 0.104±0.00 0.315±0.00 N/A N/A N/A N/A 0.169±0.00 N/A 0.103±0.00
ENSG00000236095 ENST00000416455 0.069±0.00 N/A 0.080±0.00 0.109±0.00 N/A 0.036±0.00 0.048±0.01 N/A 0.231±0.02 0.065±0.00 N/A 0.225±0.23 0.084±0.00 0.337±0.00
ENSG00000251884 ENST00000516075 N/A 0.960±0.00 N/A 0.688±0.00 0.331±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252153 ENST00000516344 N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021458 ENSMUST00000021911 N/A N/A N/A 4.230±0.00 N/A 11.040±0.00 5.218±1.72 7.347±2.39 1.927±0.47 12.905±0.00 3.034±0.36 4.010±0.00 2.641±0.50 3.203±0.97
ENSMUST00000091560 6.183±2.22 5.682±0.53 N/A 3.654±0.16 4.415±1.19 8.203±0.00 4.223±0.00 4.359±0.00 1.750±0.54 11.983±0.00 2.178±0.47 7.075±2.49 1.590±0.22 1.562±0.07
ENSMUST00000159152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065475 ENSMUST00000083541 N/A 5492.440±0.00 N/A N/A 8503.580±0.00 44261.801±0.00 N/A 4055.150±0.00 N/A N/A N/A 1803.745±1213.13 80.661±11.20 3120.990±0.00
ENSMUSG00000065599 ENSMUST00000083665 4180.540±0.00 N/A N/A N/A 4107.480±0.00 N/A N/A 3262.390±0.00 N/A N/A N/A N/A 92.228±0.00 N/A
ENSMUSG00000089854 ENSMUST00000160065 0.095±0.02 0.161±0.04 0.036±0.00 0.048±0.01 0.178±0.11 0.184±0.09 N/A 0.091±0.04 0.042±0.02 0.226±0.02 N/A 0.367±0.11 0.024±0.00 0.072±0.02
ENSMUST00000160278 0.053±0.02 N/A N/A 0.151±0.07 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A
ENSMUSG00000089868 ENSMUST00000161714 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090232 ENSMUST00000159296 N/A N/A 0.070±0.00 0.071±0.05 0.210±0.01 N/A N/A 0.100±0.00 0.041±0.00 N/A N/A 0.062±0.00 0.012±0.00 N/A
ENSMUSG00000092741 ENSMUST00000175000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.992±0.97 1193.220±0.00
ENSMUSG00000097242 ENSMUST00000180734 N/A N/A N/A N/A 3.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.394±0.35

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