C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat and sterile alpha motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148356 LRSAM1 9606 + 9:127451486-127503501 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300417 LRSAM1-201 127451486-127503501 protein_coding
  ENST00000323301 LRSAM1-004 127451513-127503499 protein_coding
  ENST00000373322 LRSAM1-006 127452255-127503499 protein_coding
  ENST00000373324 LRSAM1-003 127451505-127503499 protein_coding
  ENST00000472068 LRSAM1-012 127479949-127501054 processed_transcript
  ENST00000483302 LRSAM1-008 127479386-127503499 processed_transcript
  ENST00000485704 LRSAM1-007 127451931-127457413 processed_transcript
  ENST00000486587 LRSAM1-010 127451533-127454012 processed_transcript
  ENST00000498513 LRSAM1-011 127473929-127487560 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300417ENST00000323301ENST00000373322ENST00000373324ENST00000472068ENST00000483302ENST00000486587ENST00000498513
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300417 N/A N/A N/A 3.686±0.00 1.888±0.00 2.557±0.00 3.453±2.91 N/A 1.468±0.00 1.051±0.00 1.457±0.00 5.571±3.09 2.867±1.27 0.575±0.00
ENST00000323301 0.614±0.00 1.394±0.00 0.161±0.00 1.047±0.21 1.431±0.39 1.238±0.00 1.491±1.05 0.894±0.00 N/A N/A 1.284±0.00 2.368±0.81 1.133±0.44 1.033±0.28
ENST00000373322 N/A N/A N/A 1.176±0.00 N/A 0.260±0.00 N/A N/A 0.532±0.00 N/A 0.908±0.00 2.129±1.00 1.380±0.00 1.224±0.00
ENST00000373324 2.402±0.00 1.404±0.00 N/A 1.546±0.00 1.629±0.00 N/A N/A 4.013±0.00 N/A 2.108±0.00 1.094±0.00 0.717±0.00 N/A 2.045±0.33
ENST00000472068 N/A N/A N/A N/A N/A N/A N/A N/A 1.022±0.00 N/A 1.835±0.00 1.741±0.00 N/A N/A
ENST00000483302 N/A 2.244±0.00 N/A N/A 1.791±0.00 2.972±0.00 N/A 2.266±0.00 1.243±0.00 N/A N/A 1.854±0.00 0.853±0.00 1.225±0.00
ENST00000486587 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.934±0.00 N/A N/A N/A N/A
ENST00000498513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.438±0.00 N/A 1.292±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0001 VISTA 9:127227593-127829012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005179 IEA hormone activity
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005737 IDA cytoplasm
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0009401 IEA phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0016020 IDA membrane
GO:0016874 IEA ligase activity
GO:0030163 IMP protein catabolic process
GO:0045806 IMP negative regulation of endocytosis
GO:0046755 IMP viral budding
GO:0051865 IDA protein autoubiquitination
GO:0070086 IDA ubiquitin-dependent endocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060683 lrsam1 leucine rich repeat and sterile alpha motif containing 1 protein_coding Danio_rerio
ENSMUSG00000026792 Lrsam1 leucine rich repeat and sterile alpha motif containing 1 protein_coding Mus_musculus

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