C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat and sterile alpha motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300417 LRSAM1-201 ENSG00000148356 9606 + 9:127451486-127503501 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000300417
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000300417 3.686±0.00 1.888±0.00 2.557±0.00 3.453±2.91 1.468±0.00 1.051±0.00 1.457±0.00 5.571±3.09 2.867±1.27 0.575±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0001 VISTA 9:127227593-127829012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005179 IEA hormone activity
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005737 IDA cytoplasm
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0009401 IEA phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0016020 IDA membrane
GO:0016874 IEA ligase activity
GO:0030163 IMP protein catabolic process
GO:0045806 IMP negative regulation of endocytosis
GO:0046755 IMP viral budding
GO:0051865 IDA protein autoubiquitination
GO:0070086 IDA ubiquitin-dependent endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028132 Lrsam1-201 protein_coding Mus_musculus 0 2333
ENSMUST00000113200 Lrsam1-001 protein_coding Mus_musculus 0 2333
ENSMUST00000133832 Lrsam1-004 protein_coding Mus_musculus 0 477
ENSMUST00000127321 Lrsam1-006 protein_coding Mus_musculus 0 477
ENSMUST00000147528 Lrsam1-008 protein_coding Mus_musculus 0 466
ENSMUST00000124492 Lrsam1-002 protein_coding Mus_musculus 0 278
ENSMUST00000145578 Lrsam1-003 protein_coding Mus_musculus 0 270

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