C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148606 POLR3A 9606 - 10:77969251-78029545 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372371 POLR3A-002 77975149-78029545 protein_coding
  ENST00000472014 POLR3A-005 77991109-78009667 processed_transcript
  ENST00000473588 POLR3A-004 78002197-78019252 nonsense_mediated_decay
  ENST00000484760 POLR3A-003 78013086-78020173 processed_transcript
  ENST00000616246 POLR3A-201 77969251-77985320 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372371ENST00000484760
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372371 1.920±0.00 2.180±0.00 0.415±0.00 2.745±1.05 1.620±0.25 1.049±0.64 1.692±0.00 1.145±0.00 1.182±0.02 N/A 2.813±0.00 3.131±0.56 3.640±0.89 4.722±0.12
ENST00000484760 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A5 CIL_0008A5_0001 VISTA 10:77875813-78480338
CIL_00084G CIL_00084G_0001 VISTA 10:77912633-78517575
CIL_000809 CIL_000809_0001 VISTA 10:77918028-78521061
CIL_0007IB CIL_0007IB_0001 CGP 10:77969251-78056812

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003899 NAS:IEA DNA-directed RNA polymerase activity
GO:0005654 TAS nucleoplasm
GO:0005666 IDA DNA-directed RNA polymerase III complex
GO:0005829 TAS cytosol
GO:0006351 NAS:IEA transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0032481 TAS positive regulation of type I interferon production
GO:0032549 IEA ribonucleoside binding
GO:0032728 IMP positive regulation of interferon-beta production
GO:0045087 IMP innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071269 polr3a polymerase (RNA) III (DNA directed) polypeptide A protein_coding Danio_rerio
ENSMUSG00000025280 Polr3a polymerase (RNA) III (DNA directed) polypeptide A protein_coding Mus_musculus

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