C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000809_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm794 VISTA 9606 10:77918028-78521061
GeneTranscriptPositionBiotype
ENSG00000138326 (RPS24)
ribosomal protein S24 		ENST00000360830 (RPS24-003) 78033883-78040697 protein_coding
ENST00000372360 (RPS24-001) 78033865-78040697 protein_coding
ENST00000435275 (RPS24-201) 78033760-78040713 protein_coding
ENST00000440692 (RPS24-202) 78033760-78056812 protein_coding
ENST00000464716 (RPS24-007) 78033874-78037472 processed_transcript
ENST00000465692 (RPS24-008) 78035352-78054676 processed_transcript
ENST00000466129 (RPS24-005) 78033886-78036086 retained_intron
ENST00000475468 (RPS24-004) 78033904-78035654 processed_transcript
ENST00000476545 (RPS24-009) 78033878-78054931 processed_transcript
ENST00000478655 (RPS24-006) 78033863-78037602 retained_intron
ENST00000480662 (RPS24-012) 78039598-78040697 retained_intron
ENST00000482069 (RPS24-010) 78033917-78040696 processed_transcript
ENST00000485708 (RPS24-002) 78033844-78040670 processed_transcript
ENST00000613865 (RPS24-203) 78033760-78037335 protein_coding
ENSG00000148606 (POLR3A)
polymerase (RNA) III (DNA directed) polypeptide A, 155kDa 		ENST00000372371 (POLR3A-002) 77975149-78029545 protein_coding
ENST00000472014 (POLR3A-005) 77991109-78009667 processed_transcript
ENST00000473588 (POLR3A-004) 78002197-78019252 nonsense_mediated_decay
ENST00000484760 (POLR3A-003) 78013086-78020173 processed_transcript
ENST00000616246 (POLR3A-201) 77969251-77985320 protein_coding
ENSG00000151208 (DLG5)
discs, large homolog 5 (Drosophila) 		ENST00000372391 (DLG5-001) 77790791-77926526 protein_coding
ENST00000424842 (DLG5-005) 77790791-77829442 protein_coding
ENST00000459739 (DLG5-003) 77793544-77821538 processed_transcript
ENST00000463362 (DLG5-006) 77791901-77820048 retained_intron
ENST00000466198 (DLG5-010) 77821782-77824730 retained_intron
ENST00000468332 (DLG5-002) 77796061-77889507 nonsense_mediated_decay
ENST00000475613 (DLG5-004) 77790791-77869191 retained_intron
ENST00000476354 (DLG5-012) 77816033-77820021 retained_intron
ENST00000484525 (DLG5-008) 77806796-77807977 processed_transcript
ENST00000489547 (DLG5-007) 77806105-77812229 processed_transcript
ENSG00000227136 (LINC00595)
long intergenic non-protein coding RNA 595 		ENST00000415959 (LINC00595-001) 78267328-78278065 lincRNA
ENST00000459633 (LINC00595-004) 78267442-78330595 lincRNA
ENST00000461034 (LINC00595-002) 78267379-78302046 lincRNA
ENST00000476909 (LINC00595-003) 78267410-78280213 lincRNA
ENSG00000230229 (RP11-90J7.4)
 ENST00000416341 (RP11-90J7.4-001) 78352597-78356100 lincRNA
ENSG00000230417 (LINC00856)
long intergenic non-protein coding RNA 856 		ENST00000421324 (LINC00856-006) 78238255-78675109 lincRNA
ENST00000423770 (LINC00856-003) 78248808-78250451 lincRNA
ENST00000432742 (LINC00856-002) 78248808-78353336 lincRNA
ENST00000434974 (LINC00856-001) 78248748-78252645 lincRNA
ENST00000510550 (LINC00856-005) 78406544-78550857 lincRNA
ENST00000624665 (LINC00856-004) 78248740-78551355 lincRNA
ENSG00000231957 (GNAI2P2)
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 pseudogene 2 		ENST00000417003 (GNAI2P2-001) 78068623-78069538 processed_pseudogene
ENSG00000233871 (DLG5-AS1)
DLG5 antisense RNA 1 		ENST00000449852 (DLG5-AS1-001) 77927372-77929824 antisense
ENSG00000234612 (H2AFZP5)
H2A histone family, member Z pseudogene 5 		ENST00000446960 (H2AFZP5-001) 77953495-77953876 processed_pseudogene
ENSG00000274686 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000619972 (Metazoa_SRP.1-290) 77966173-77966440 misc_RNA
CIL_000809_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm794 VISTA 10090 14:24349772-24952271
GeneTranscriptPositionBiotype
ENSMUSG00000025280 (Polr3a)
polymerase (RNA) III (DNA directed) polypeptide A 		ENSMUST00000026322 (Polr3a-201) 24448694-24487046 protein_coding
ENSMUSG00000025290 (Rps24)
ribosomal protein S24 		ENSMUST00000112384 (Rps24-201) 24490681-24495432 protein_coding
ENSMUST00000169826 (Rps24-202) 24490681-24496146 protein_coding
ENSMUSG00000038792 (4931403M11Rik)
RIKEN cDNA 4931403M11 gene 		ENSMUST00000038250 (4931403M11Rik-001) 24617568-24621693 lincRNA
ENSMUSG00000048628 (4930542C16Rik)
RIKEN cDNA 4930542C16 gene 		ENSMUST00000062438 (4930542C16Rik-001) 24615118-24617304 lincRNA
ENSMUST00000159360 (4930542C16Rik-002) 24606704-24617311 lincRNA
ENSMUSG00000072686 (Gm10398)
predicted gene 10398 		ENSMUST00000100826 (Gm10398-001) 24909414-24913440 lincRNA
ENSMUSG00000089887 (4930428N03Rik)
RIKEN cDNA 4930428N03 gene 		ENSMUST00000159562 (4930428N03Rik-002) 24622159-24629200 lincRNA
ENSMUST00000159744 (4930428N03Rik-001) 24622138-24622860 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138326 ENST00000360830 420.235±0.00 511.409±0.00 13.050±0.00 148.085±32.12 272.893±86.57 293.323±234.77 77.663±60.14 128.050±58.52 143.776±34.22 398.325±309.37 69.650±49.76 1156.288±899.87 723.173±67.90 410.152±58.20
ENST00000372360 136.060±0.00 158.003±0.00 N/A N/A 82.014±0.00 N/A N/A N/A 84.507±0.00 31.788±0.00 N/A 579.228±476.46 147.457±0.00 122.597±0.00
ENST00000435275 N/A N/A 17.368±0.00 N/A 114.995±0.00 116.266±70.41 N/A 86.855±71.10 49.279±29.28 100.032±76.50 92.591±0.00 161.920±135.21 140.690±42.43 90.992±0.00
ENST00000440692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464716 N/A N/A 30.166±0.00 N/A N/A 72.328±0.00 15.229±0.00 43.677±0.00 65.094±0.00 33.518±0.00 N/A 96.356±0.00 N/A N/A
ENST00000465692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485708 N/A N/A N/A 50.261±7.14 N/A 100.626±0.00 80.339±49.22 N/A 46.402±0.00 N/A 368.269±283.32 N/A N/A N/A
ENST00000613865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148606 ENST00000372371 1.920±0.00 2.180±0.00 0.415±0.00 2.745±1.05 1.620±0.25 1.049±0.64 1.692±0.00 1.145±0.00 1.182±0.02 N/A 2.813±0.00 3.131±0.56 3.640±0.89 4.722±0.12
ENST00000472014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484760 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A N/A N/A N/A
ENST00000616246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000151208 ENST00000372391 5.159±0.00 1.874±0.00 0.685±0.00 1.723±1.26 3.631±0.20 3.548±2.89 1.174±1.11 1.750±1.48 1.893±1.37 3.473±0.00 8.623±0.00 8.085±4.63 15.441±8.51 9.804±2.41
ENST00000424842 2.680±0.00 1.736±0.00 N/A 1.478±0.98 4.663±0.00 7.327±0.00 0.631±0.00 3.304±0.00 0.431±0.00 1.525±0.00 N/A 8.929±0.00 5.229±0.41 10.398±0.00
ENST00000459739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.931±0.00 N/A N/A N/A
ENST00000463362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475613 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.634±0.00 N/A N/A N/A N/A
ENST00000476354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227136 ENST00000415959 N/A N/A N/A N/A N/A 1.109±0.00 N/A N/A N/A N/A N/A N/A N/A 0.169±0.07
ENST00000459633 N/A N/A N/A 0.655±0.00 0.296±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.110±0.04
ENST00000461034 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A 0.032±0.00 N/A 0.038±0.00
ENST00000476909 N/A 0.187±0.00 N/A 0.171±0.00 N/A 0.780±0.00 0.218±0.00 N/A 0.020±0.00 N/A N/A 0.062±0.00 N/A 0.119±0.03
ENSG00000230229 ENST00000416341 N/A N/A N/A 0.092±0.00 N/A N/A N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A
ENSG00000230417 ENST00000421324 N/A N/A N/A N/A N/A N/A 0.113±0.00 0.116±0.00 0.042±0.00 N/A N/A N/A N/A 0.050±0.02
ENST00000423770 N/A N/A N/A 0.865±0.00 N/A N/A N/A N/A N/A 0.380±0.00 N/A 0.242±0.17 N/A N/A
ENST00000432742 N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434974 N/A N/A N/A 0.131±0.07 0.032±0.01 0.006±0.00 N/A N/A 0.028±0.00 N/A N/A 0.011±0.00 N/A 0.035±0.01
ENST00000510550 N/A N/A N/A 0.229±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00
ENST00000624665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A
ENSG00000231957 ENST00000417003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.01 N/A N/A
ENSG00000233871 ENST00000449852 0.214±0.00 0.143±0.00 N/A 1.378±0.11 0.342±0.18 0.332±0.00 0.111±0.00 0.549±0.18 0.145±0.04 0.329±0.00 0.462±0.00 1.178±0.49 0.440±0.10 1.826±0.72
ENSG00000234612 ENST00000446960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00
ENSG00000274686 ENST00000619972 0.426±0.00 1.161±0.00 N/A 0.402±0.00 0.811±0.00 0.804±0.00 0.278±0.00 0.516±0.00 0.266±0.00 0.482±0.00 0.066±0.00 1.320±0.00 N/A 0.270±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025280 ENSMUST00000026322 3.336±1.27 1.061±0.26 3.987±0.12 4.257±2.06 1.885±0.40 2.001±0.48 1.834±0.30 3.174±0.45 2.020±0.96 2.468±0.34 1.556±0.37 3.684±1.54 5.197±1.29 2.687±0.36
ENSMUSG00000025290 ENSMUST00000112384 459.793±154.01 35.372±11.87 1695.065±142.63 613.710±234.38 535.799±188.91 396.797±67.67 342.438±11.50 365.775±20.21 842.138±768.63 325.305±10.75 172.536±64.01 551.808±549.99 958.098±471.83 606.300±49.24
ENSMUST00000169826 N/A N/A N/A 87.474±0.00 N/A N/A N/A N/A 102.038±80.78 N/A N/A 203.760±142.08 284.783±183.60 224.936±0.00
ENSMUSG00000038792 ENSMUST00000038250 0.033±0.00 N/A 0.036±0.01 0.025±0.00 N/A N/A 0.057±0.00 N/A 0.015±0.00 N/A N/A 0.045±0.00 N/A 1.400±0.63
ENSMUSG00000048628 ENSMUST00000062438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.222±3.41
ENSMUST00000159360 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000072686 ENSMUST00000100826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.07
ENSMUSG00000089887 ENSMUST00000159562 N/A N/A 0.031±0.02 0.087±0.00 N/A N/A 0.038±0.00 0.040±0.00 N/A N/A N/A 0.048±0.00 0.007±0.00 16.120±0.81
ENSMUST00000159744 N/A N/A N/A 0.129±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 72.055±72.47

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