C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148835 TAF5 9606 + 10:103367967-103389065 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369839 TAF5-001 103367967-103389065 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000369839
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000369839 1.362±0.00 1.266±0.00 1.762±0.00 1.094±0.00 1.601±0.42 0.961±0.00 1.154±0.00 1.324±0.00 1.817±0.42 1.943±0.15 10.374±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065U CIL_00065U_0001 CGP 10:103302796-103389065
CIL_0001HK CIL_0001HK_0002 CGP 10:103367967-103396466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0006352 IDA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0015629 IDA actin cytoskeleton
GO:0016032 TAS viral process
GO:0016568 IC chromatin modification
GO:0016573 IDA histone acetylation
GO:0033276 IDA transcription factor TFTC complex
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044212 IDA transcription regulatory region DNA binding
GO:0046983 IDA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018325 taf5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSMUSG00000025049 Taf5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus

Loading