C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00065U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156374-ENSG00000148835 CGP 9606 10:103302796-103389065
GeneTranscriptPositionBiotype
ENSG00000148835 (TAF5)
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa 		ENST00000369839 (TAF5-001) 103367967-103389065 protein_coding
ENSG00000156374 (PCGF6)
polycomb group ring finger 6 		ENST00000337211 (PCGF6-003) 103302796-103351079 protein_coding
ENST00000369847 (PCGF6-001) 103302796-103351134 protein_coding
ENST00000490296 (PCGF6-002) 103303127-103351081 processed_transcript
ENST00000492755 (PCGF6-006) 103348355-103348939 retained_intron
ENSG00000173915 (USMG5)
up-regulated during skeletal muscle growth 5 homolog (mouse) 		ENST00000309579 (USMG5-002) 103389050-103396466 protein_coding
ENST00000337003 (USMG5-003) 103389050-103396466 protein_coding
ENST00000369811 (USMG5-005) 103389050-103396074 protein_coding
ENST00000369815 (USMG5-001) 103389050-103396441 protein_coding
ENST00000369825 (USMG5-004) 103389041-103396023 protein_coding
ENSG00000212413 (RNU11-3P)
RNA, U11 small nuclear 3, pseudogene 		ENST00000391111 (RNU11-3P-201) 103312436-103312568 snRNA
CIL_00065U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025050-ENSMUSG00000025049 CGP 10090 19:47033619-47083479
GeneTranscriptPositionBiotype
ENSMUSG00000025049 (Taf5)
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSMUST00000026027 (Taf5-201) 47067748-47083479 protein_coding
ENSMUSG00000025050 (Pcgf6)
polycomb group ring finger 6 		ENSMUST00000026032 (Pcgf6-201) 47033619-47050845 protein_coding
ENSMUSG00000071528 (Usmg5)
upregulated during skeletal muscle growth 5 		ENSMUST00000096014 (Usmg5-201) 47083471-47090625 protein_coding
ENSMUSG00000094400 (Gm23140)
predicted gene, 23140 		ENSMUST00000082487 (Gm23140-201) 47058162-47058268 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065U_0001ENSG00000148835ENST00000369839ENSG00000156374ENST00000337211ENST00000369847ENST00000490296ENST00000492755ENSG00000173915ENST00000309579ENST00000337003ENST00000369811ENST00000369815ENST00000369825ENSG00000212413ENST00000391111CIL_00065U_0002ENSMUSG00000025049ENSMUST00000026027ENSMUSG00000025050ENSMUST00000026032ENSMUSG00000071528ENSMUST00000096014ENSMUSG00000094400ENSMUST00000082487
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065U_0001ENSG00000148835ENST00000369839ENSG00000156374ENST00000337211ENST00000369847ENST00000490296ENSG00000173915ENST00000309579ENST00000337003ENST00000369811ENST00000369815ENSG00000212413ENST00000391111CIL_00065U_0002ENSMUSG00000025049ENSMUST00000026027ENSMUSG00000025050ENSMUST00000026032ENSMUSG00000071528ENSMUST00000096014ENSMUSG00000094400ENSMUST00000082487
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148835 ENST00000369839 1.362±0.00 1.266±0.00 N/A 1.762±0.00 1.094±0.00 1.601±0.42 N/A N/A 0.961±0.00 1.154±0.00 1.324±0.00 1.817±0.42 1.943±0.15 10.374±0.86
ENSG00000156374 ENST00000337211 N/A N/A 0.372±0.00 0.602±0.00 0.991±0.33 0.586±0.00 0.747±0.00 0.656±0.00 N/A 0.851±0.00 1.804±0.00 2.563±0.00 0.990±0.72 4.065±0.00
ENST00000369847 2.930±0.00 3.835±0.00 0.185±0.00 0.675±0.27 1.267±0.61 0.716±0.56 0.994±0.47 0.909±0.45 1.652±0.00 0.444±0.00 1.139±0.00 3.417±1.31 1.787±0.11 5.319±1.49
ENST00000490296 1.212±0.00 N/A N/A 1.634±0.00 1.477±0.00 N/A N/A 0.570±0.00 0.639±0.00 0.802±0.00 0.968±0.00 N/A N/A 1.039±0.00
ENST00000492755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173915 ENST00000309579 51.077±0.00 47.036±0.00 24.376±0.00 157.650±77.02 74.519±46.05 70.625±0.33 192.127±70.09 102.343±15.39 109.390±19.84 50.710±35.32 95.343±25.76 93.694±34.28 78.800±39.46 55.961±0.00
ENST00000337003 N/A N/A N/A 16.404±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 9.291±0.00 N/A
ENST00000369811 N/A N/A N/A N/A 3.796±0.00 5.879±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369815 N/A N/A N/A N/A N/A 10.340±0.00 N/A 17.265±0.00 N/A 12.454±0.00 8.860±0.00 13.032±6.52 N/A 19.077±2.71
ENST00000369825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212413 ENST00000391111 N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025049 ENSMUST00000026027 1.504±0.42 1.120±0.39 1.341±0.00 3.029±1.45 2.071±0.74 1.506±0.42 N/A 1.465±0.00 3.111±1.96 1.515±0.21 N/A 3.109±0.98 2.868±0.93 3.338±0.28
ENSMUSG00000025050 ENSMUST00000026032 4.638±2.69 4.158±1.64 6.948±1.23 6.019±4.36 2.407±0.38 3.281±1.66 0.944±0.11 3.163±1.69 3.168±1.02 1.060±0.21 1.356±0.38 6.265±2.95 5.522±2.82 14.935±4.10
ENSMUSG00000071528 ENSMUST00000096014 61.070±12.57 7.824±1.17 237.418±42.11 213.606±79.09 36.573±21.48 35.280±5.33 346.373±28.67 201.877±77.69 259.947±183.61 28.283±5.43 600.879±40.47 182.891±127.18 319.926±82.86 38.150±6.94
ENSMUSG00000094400 ENSMUST00000082487 N/A N/A N/A 24.353±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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