C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: metastasis associated 1 family, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149480 MTA2 9606 - 11:62593214-62601840 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000278823 MTA2-001 62593214-62601840 protein_coding
  ENST00000524902 MTA2-002 62593215-62599317 protein_coding
  ENST00000526844 MTA2-005 62598109-62601487 retained_intron
  ENST00000527204 MTA2-003 62593842-62601275 protein_coding
  ENST00000531179 MTA2-007 62595748-62596661 retained_intron
  ENST00000531261 MTA2-006 62596766-62598129 retained_intron
  ENST00000532239 MTA2-004 62598289-62600346 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000278823ENST00000524902ENST00000527204ENST00000531261
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000278823 26.963±0.00 20.631±0.00 0.300±0.00 11.569±7.68 10.978±8.77 7.671±6.62 4.178±3.55 16.347±0.00 5.991±2.05 13.045±10.50 10.385±0.00 21.426±14.55 14.769±2.52 15.328±5.29
ENST00000524902 N/A 15.062±0.00 N/A N/A N/A N/A N/A 3.575±0.00 4.357±0.00 N/A N/A 10.483±7.83 7.305±3.25 10.312±6.10
ENST00000527204 9.020±0.00 N/A 0.975±0.00 5.034±0.00 7.127±0.00 2.782±0.00 1.450±0.72 N/A 2.378±0.00 3.631±1.04 1.254±0.00 6.490±4.64 N/A N/A
ENST00000531261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.129±0.00 29.237±0.00 28.516±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000989 IEA transcription factor binding transcription factor activity
GO:0001085 IPI RNA polymerase II transcription factor binding
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004407 IEA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006306 IEA DNA methylation
GO:0006333 TAS chromatin assembly or disassembly
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016575 IEA histone deacetylation
GO:0016581 IDA NuRD complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013031 mta2 metastasis associated 1 family, member 2 protein_coding Danio_rerio
ENSMUSG00000071646 Mta2 metastasis-associated gene family, member 2 protein_coding Mus_musculus

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