C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: metastasis associated 1 family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000278823 MTA2-001 ENSG00000149480 9606 - 11:62593214-62601840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000278823
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000278823 26.963±0.00 20.631±0.00 0.300±0.00 11.569±7.68 10.978±8.77 7.671±6.62 4.178±3.55 16.347±0.00 5.991±2.05 13.045±10.50 10.385±0.00 21.426±14.55 14.769±2.52 15.328±5.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000989 IEA transcription factor binding transcription factor activity
GO:0001085 IPI RNA polymerase II transcription factor binding
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004407 IEA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006306 IEA DNA methylation
GO:0006333 TAS chromatin assembly or disassembly
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016575 IEA histone deacetylation
GO:0016581 IDA NuRD complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096240 Mta2-001 protein_coding Mus_musculus 0 3454
ENSMUST00000135300 Mta2-002 processed_transcript Mus_musculus 0 760
ENSMUST00000151386 Mta2-005 retained_intron Mus_musculus 0 660
ENSMUST00000169535 Mta2-006 processed_transcript Mus_musculus 0 531
ENSMUST00000137956 Mta2-003 processed_transcript Mus_musculus 0 418
ENSMUST00000132463 Mta2-004 retained_intron Mus_musculus 0 305

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