C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: metastasis-associated gene family, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071646 Mta2 10090 + 19:8941875-8952303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000096240 Mta2-001 8941875-8952303 protein_coding
  ENSMUST00000132463 Mta2-004 8944034-8947136 retained_intron
  ENSMUST00000135300 Mta2-002 8942506-8946727 processed_transcript
  ENSMUST00000137956 Mta2-003 8942493-8945873 processed_transcript
  ENSMUST00000151386 Mta2-005 8946400-8947698 retained_intron
  ENSMUST00000169535 Mta2-006 8945095-8946748 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096240ENSMUST00000132463ENSMUST00000135300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096240 6.609±2.51 11.610±4.84 18.432±5.03 14.324±7.74 9.275±4.94 9.266±4.48 1.080±0.00 6.917±0.00 14.159±7.91 10.907±4.68 8.814±0.99 11.053±3.48 19.823±8.45 4.784±0.70
ENSMUST00000132463 N/A N/A N/A 5.797±0.00 N/A N/A N/A N/A N/A N/A N/A 14.656±0.00 N/A N/A
ENSMUST00000135300 N/A N/A N/A 23.729±0.00 N/A N/A N/A N/A N/A N/A N/A 87.881±0.00 85.195±25.55 33.408±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760
CIL_0004IG CIL_0004IG_0002 CGP 19:8929694-8952303

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000989 IDA transcription factor binding transcription factor activity
GO:0001085 IEA RNA polymerase II transcription factor binding
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004407 IDA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006306 IMP DNA methylation
GO:0006323 TAS DNA packaging
GO:0006338 TAS chromatin remodeling
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016575 IDA histone deacetylation
GO:0016581 IDA NuRD complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013031 mta2 metastasis associated 1 family, member 2 protein_coding Danio_rerio
ENSG00000149480 MTA2 metastasis associated 1 family, member 2 protein_coding Homo_sapiens

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