C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 7, 59kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149532 CPSF7 9606 - 11:61402641-61430031 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340437 CPSF7-001 61402641-61429911 protein_coding
  ENST00000394888 CPSF7-006 61402649-61430031 protein_coding
  ENST00000413184 CPSF7-017 61420057-61429550 protein_coding
  ENST00000413232 CPSF7-002 61416429-61429814 protein_coding
  ENST00000439958 CPSF7-005 61402731-61430014 protein_coding
  ENST00000448745 CPSF7-007 61404419-61429304 protein_coding
  ENST00000449811 CPSF7-010 61420041-61429715 protein_coding
  ENST00000450000 CPSF7-003 61420035-61429922 protein_coding
  ENST00000463244 CPSF7-024 61420993-61429992 processed_transcript
  ENST00000474684 CPSF7-009 61421395-61429941 retained_intron
  ENST00000477890 CPSF7-027 61411007-61429968 protein_coding
  ENST00000489728 CPSF7-011 61421314-61429533 retained_intron
  ENST00000494016 CPSF7-014 61404288-61406170 processed_transcript
  ENST00000535222 CPSF7-019 61416297-61429978 nonsense_mediated_decay
  ENST00000536145 CPSF7-022 61420058-61429290 nonsense_mediated_decay
  ENST00000536548 CPSF7-004 61420031-61429922 nonsense_mediated_decay
  ENST00000537162 CPSF7-020 61416465-61429988 nonsense_mediated_decay
  ENST00000537641 CPSF7-018 61410572-61429975 retained_intron
  ENST00000539952 CPSF7-015 61416179-61429920 protein_coding
  ENST00000541963 CPSF7-025 61419970-61429948 protein_coding
  ENST00000543545 CPSF7-023 61416500-61429264 nonsense_mediated_decay
  ENST00000544585 CPSF7-013 61416385-61429922 protein_coding
  ENST00000544669 CPSF7-012 61416178-61429950 retained_intron
  ENST00000544990 CPSF7-026 61416369-61429284 nonsense_mediated_decay
  ENST00000545934 CPSF7-016 61420494-61429920 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340437ENST00000394888ENST00000439958ENST00000448745ENST00000537641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340437 5.806±0.00 N/A N/A N/A 3.827±0.00 N/A N/A N/A N/A N/A N/A N/A 4.585±0.81 8.005±0.00
ENST00000394888 N/A 7.730±0.00 2.514±0.00 8.602±3.48 N/A 3.732±0.93 0.841±0.00 5.239±0.00 N/A 4.365±0.00 N/A 9.330±5.91 4.026±0.35 N/A
ENST00000439958 13.241±0.00 18.026±0.00 1.435±0.00 17.514±0.00 7.959±3.23 8.086±0.00 9.471±0.00 14.584±0.00 5.406±2.31 16.992±0.00 11.285±8.10 16.103±10.26 10.457±1.31 20.768±1.32
ENST00000448745 N/A N/A N/A N/A N/A N/A 1.431±0.00 4.911±0.00 6.169±0.00 N/A N/A 2.736±0.00 N/A N/A
ENST00000537641 N/A N/A 3.724±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0001 VISTA 11:61244303-61847279

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005849 IDA mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0051262 IDA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000034820 Cpsf7 cleavage and polyadenylation specific factor 7 protein_coding Mus_musculus

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