C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 7, 59kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439958 CPSF7-005 ENSG00000149532 9606 - 11:61402731-61430014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000439958
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000439958 13.241±0.00 18.026±0.00 1.435±0.00 17.514±0.00 7.959±3.23 8.086±0.00 9.471±0.00 14.584±0.00 5.406±2.31 16.992±0.00 11.285±8.10 16.103±10.26 10.457±1.31 20.768±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0001 VISTA 11:61244303-61847279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005849 IDA mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0051262 IDA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038379 Cpsf7-201 protein_coding Mus_musculus 0 3430
ENSMUST00000123788 Tmem216-005 protein_coding Mus_musculus 0 259
ENSMUST00000145210 Tmem216-003 protein_coding Mus_musculus 0 209

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