C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 7, 59kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394888 CPSF7-006 ENSG00000149532 9606 - 11:61402649-61430031 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLungOvaryPlacentaENST00000394888
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Lung Ovary Placenta
ENST00000394888 7.730±0.00 2.514±0.00 8.602±3.48 3.732±0.93 0.841±0.00 5.239±0.00 4.365±0.00 9.330±5.91 4.026±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0001 VISTA 11:61244303-61847279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005849 IDA mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0051262 IDA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038379 Cpsf7-201 protein_coding Mus_musculus 0 3742
ENSMUST00000123788 Tmem216-005 protein_coding Mus_musculus 0 259
ENSMUST00000145210 Tmem216-003 protein_coding Mus_musculus 0 209

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