C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149806 FAU 9606 - 11:65120628-65122473 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000279259 FAU-005 65120638-65122153 protein_coding
  ENST00000434372 FAU-006 65121283-65122177 protein_coding
  ENST00000525297 FAU-004 65120631-65121821 protein_coding
  ENST00000526555 FAU-007 65120757-65122113 protein_coding
  ENST00000527548 FAU-008 65120631-65122113 protein_coding
  ENST00000529259 FAU-003 65120697-65121915 protein_coding
  ENST00000529639 FAU-001 65120628-65122473 protein_coding
  ENST00000531357 FAU-002 65120634-65122117 retained_intron
  ENST00000531743 FAU-009 65120630-65122057 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000279259ENST00000525297ENST00000526555ENST00000527548ENST00000529639
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000279259 251.071±0.00 451.404±0.00 N/A 84.106±0.00 184.820±0.00 372.897±0.00 99.626±0.00 158.598±0.00 169.160±0.00 501.629±0.00 152.483±0.00 N/A N/A 173.756±0.00
ENST00000525297 228.924±0.00 390.105±0.00 17.097±0.00 96.860±0.00 79.540±56.39 296.879±0.00 81.915±0.00 N/A 159.643±0.00 393.343±0.00 94.940±67.38 N/A N/A 130.395±0.00
ENST00000526555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 204.560±0.00 213.912±0.00 113.426±0.00
ENST00000527548 N/A N/A 14.022±0.00 37.627±17.77 20.554±0.00 91.399±66.25 50.735±43.72 72.030±50.10 93.268±55.62 281.755±256.00 116.577±73.47 562.199±612.66 892.705±214.01 79.884±0.00
ENST00000529639 N/A N/A N/A 30.629±0.00 20.138±0.00 18.923±0.00 8.982±0.00 32.296±0.00 17.105±0.00 12.355±0.00 28.700±0.00 137.372±117.56 114.952±0.00 50.232±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002227 IDA innate immune response in mucosa
GO:0003723 TAS RNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008150 ND biological_process
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019731 IDA antibacterial humoral response
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0050830 IDA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014830 faua Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a protein_coding Danio_rerio
ENSDARG00000043663 faub Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b protein_coding Danio_rerio
ENSMUSG00000038274 Fau Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) protein_coding Mus_musculus
ENSMUSG00000050299 Gm9843 predicted gene 9843 protein_coding Mus_musculus

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