C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane and coiled-coil domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000150403 TMCO3 9606 + 13:113490995-113554590 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375391 TMCO3-008 113491043-113550229 protein_coding
  ENST00000434316 TMCO3-007 113490995-113550195 protein_coding
  ENST00000460039 TMCO3-002 113545755-113549915 processed_transcript
  ENST00000462877 TMCO3-004 113500021-113520661 protein_coding
  ENST00000465556 TMCO3-001 113520546-113539482 processed_transcript
  ENST00000473287 TMCO3-005 113495871-113498645 protein_coding
  ENST00000474393 TMCO3-006 113491096-113535286 protein_coding
  ENST00000491166 TMCO3-003 113547149-113549638 processed_transcript
  ENST00000619336 TMCO3-011 113548333-113552214 nonsense_mediated_decay
  ENST00000620021 TMCO3-010 113548303-113554590 protein_coding
  ENST00000622371 TMCO3-009 113500024-113506062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375391ENST00000434316ENST00000460039ENST00000473287ENST00000474393ENST00000622371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375391 N/A N/A N/A 2.971±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.685±0.00
ENST00000434316 11.284±0.00 8.420±0.00 3.396±0.00 5.526±1.23 8.478±3.73 6.115±1.76 4.037±2.55 9.959±8.28 6.857±4.58 6.845±4.64 1.359±0.32 22.992±9.91 16.265±3.18 3.696±1.04
ENST00000460039 N/A N/A N/A N/A N/A 13.661±0.00 N/A N/A 11.207±0.00 N/A 3.964±0.00 N/A N/A N/A
ENST00000473287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.270±0.00 N/A N/A
ENST00000474393 N/A N/A N/A N/A N/A N/A N/A N/A 1.138±0.00 0.695±0.00 1.921±0.00 N/A N/A N/A
ENST00000622371 N/A N/A 1.377±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z2 CIL_0004Z2_0002 CGP 13:113455819-113554590
CIL_0000TH CIL_0000TH_0001 CGP 13:113490995-113641470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006812 IEA cation transport
GO:0015299 IEA solute:proton antiporter activity
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075108 tmco3 transmembrane and coiled-coil domains 3 protein_coding Danio_rerio
ENSMUSG00000038497 Tmco3 transmembrane and coiled-coil domains 3 protein_coding Mus_musculus

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