C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004Z2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041592-ENSDARG00000075108 CGP 7955 1:82875-99795
GeneTranscriptPositionBiotype
ENSDARG00000041592 (dcun1d2b)
DCN1, defective in cullin neddylation 1, domain containing 2b 		ENSDART00000060971 (dcun1d2b-201) 82875-89602 protein_coding
ENSDARG00000075108 (tmco3)
transmembrane and coiled-coil domains 3 		ENSDART00000109529 (tmco3-201) 93296-99795 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004Z2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000150401-ENSG00000150403 CGP 9606 13:113455819-113554590
GeneTranscriptPositionBiotype
ENSG00000150401 (DCUN1D2)
DCN1, defective in cullin neddylation 1, domain containing 2 		ENST00000332592 (DCUN1D2-002) 113455819-113490691 protein_coding
ENST00000375403 (DCUN1D2-001) 113455819-113490691 nonsense_mediated_decay
ENST00000438545 (DCUN1D2-003) 113459312-113490608 nonsense_mediated_decay
ENST00000439909 (DCUN1D2-004) 113480648-113490691 protein_coding
ENST00000460318 (DCUN1D2-005) 113480466-113483996 processed_transcript
ENST00000465710 (DCUN1D2-007) 113483963-113490494 protein_coding
ENST00000465938 (DCUN1D2-009) 113474197-113484190 protein_coding
ENST00000478244 (DCUN1D2-006) 113457047-113490952 protein_coding
ENST00000482038 (DCUN1D2-011) 113457797-113459543 retained_intron
ENST00000491647 (DCUN1D2-010) 113461055-113463088 retained_intron
ENST00000496873 (DCUN1D2-008) 113474210-113490951 protein_coding
ENSG00000150403 (TMCO3)
transmembrane and coiled-coil domains 3 		ENST00000375391 (TMCO3-008) 113491043-113550229 protein_coding
ENST00000434316 (TMCO3-007) 113490995-113550195 protein_coding
ENST00000460039 (TMCO3-002) 113545755-113549915 processed_transcript
ENST00000462877 (TMCO3-004) 113500021-113520661 protein_coding
ENST00000465556 (TMCO3-001) 113520546-113539482 processed_transcript
ENST00000473287 (TMCO3-005) 113495871-113498645 protein_coding
ENST00000474393 (TMCO3-006) 113491096-113535286 protein_coding
ENST00000491166 (TMCO3-003) 113547149-113549638 processed_transcript
ENST00000619336 (TMCO3-011) 113548333-113552214 nonsense_mediated_decay
ENST00000620021 (TMCO3-010) 113548303-113554590 protein_coding
ENST00000622371 (TMCO3-009) 113500024-113506062 protein_coding
ENSG00000202347 (RNU1-16P)
RNA, U1 small nuclear 16, pseudogene 		ENST00000365477 (RNU1-16P-201) 113478915-113479078 snRNA
ENSG00000233613 (DCUN1D2-AS)
DCUN1D2 antisense RNA 		ENST00000414992 (DCUN1D2-AS-001) 113468901-113476135 antisense
ENST00000453584 (DCUN1D2-AS-002) 113475390-113476135 antisense
ENSG00000276248 (RP11-230F18.5)
 ENST00000619092 (RP11-230F18.5-001) 113527260-113530621 sense_intronic
ENSG00000276916 (RP11-230F18.6)
 ENST00000619338 (RP11-230F18.6-001) 113511747-113514473 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0004Z2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038506-ENSMUSG00000038497 CGP 10090 8:13255963-13322924
GeneTranscriptPositionBiotype
ENSMUSG00000038497 (Tmco3)
transmembrane and coiled-coil domains 3 		ENSMUST00000045229 (Tmco3-201) 13288013-13322924 protein_coding
ENSMUSG00000038506 (Dcun1d2)
DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae) 		ENSMUST00000045366 (Dcun1d2-201) 13255963-13288126 protein_coding
ENSMUST00000110838 (Dcun1d2-202) 13255963-13288126 protein_coding
ENSMUST00000110839 (Dcun1d2-203) 13255963-13288126 protein_coding
ENSMUST00000110840 (Dcun1d2-204) 13255963-13288126 protein_coding
ENSMUSG00000089026 (Gm25014)
predicted gene, 25014 		ENSMUST00000158401 (Gm25014-201) 13283115-13283217 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Z2_0001ENSDARG00000041592ENSDART00000060971ENSDARG00000075108ENSDART00000109529CIL_0004Z2_0002ENSG00000150401ENST00000332592ENST00000375403ENST00000438545ENST00000439909ENST00000460318ENST00000465710ENST00000465938ENST00000478244ENST00000482038ENST00000491647ENST00000496873ENSG00000150403ENST00000375391ENST00000434316ENST00000460039ENST00000462877ENST00000465556ENST00000473287ENST00000474393ENST00000491166ENST00000619336ENST00000620021ENST00000622371ENSG00000202347ENST00000365477ENSG00000233613ENST00000414992ENST00000453584ENSG00000276248ENST00000619092ENSG00000276916ENST00000619338CIL_0004Z2_0003ENSMUSG00000038497ENSMUST00000045229ENSMUSG00000038506ENSMUST00000045366ENSMUST00000110838ENSMUST00000110839ENSMUST00000110840ENSMUSG00000089026ENSMUST00000158401
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Z2_0001ENSDARG00000041592ENSDART00000060971ENSDARG00000075108ENSDART00000109529CIL_0004Z2_0002ENSG00000150401ENST00000332592ENST00000375403ENST00000438545ENST00000465938ENST00000478244ENSG00000150403ENST00000375391ENST00000434316ENST00000460039ENST00000473287ENST00000474393ENST00000622371ENSG00000202347ENST00000365477ENSG00000233613ENST00000414992ENST00000453584ENSG00000276248ENST00000619092ENSG00000276916ENST00000619338CIL_0004Z2_0003ENSMUSG00000038497ENSMUST00000045229ENSMUSG00000038506ENSMUST00000045366ENSMUST00000110838ENSMUST00000110839ENSMUST00000110840ENSMUSG00000089026ENSMUST00000158401
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041592 ENSDART00000060971 N/A N/A N/A 6.263±4.98 N/A N/A 14.838±2.48 2.408±0.00 0.378±0.00 N/A 5.368±0.00 N/A N/A N/A
ENSDARG00000075108 ENSDART00000109529 N/A N/A N/A N/A N/A N/A 1.637±0.00 N/A 0.110±0.00 N/A 0.681±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000150401 ENST00000332592 1.091±0.00 2.413±0.00 N/A 7.510±0.00 2.232±0.00 0.536±0.00 10.909±8.61 1.788±0.00 1.024±0.00 1.930±0.00 11.249±4.43 1.922±0.84 1.186±0.33 1.400±0.00
ENST00000375403 N/A 1.011±0.00 N/A N/A 0.396±0.00 1.219±0.28 1.932±0.00 1.530±0.00 0.268±0.07 0.398±0.00 N/A 2.574±1.76 1.032±0.22 3.670±1.07
ENST00000438545 N/A N/A 0.676±0.00 N/A N/A 1.144±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465938 2.269±0.00 N/A N/A 10.995±0.00 2.373±0.41 N/A 24.782±0.00 N/A 1.870±0.00 N/A 20.854±0.00 2.008±0.00 N/A N/A
ENST00000478244 N/A N/A N/A N/A N/A N/A 1.318±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000482038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000150403 ENST00000375391 N/A N/A N/A 2.971±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.685±0.00
ENST00000434316 11.284±0.00 8.420±0.00 3.396±0.00 5.526±1.23 8.478±3.73 6.115±1.76 4.037±2.55 9.959±8.28 6.857±4.58 6.845±4.64 1.359±0.32 22.992±9.91 16.265±3.18 3.696±1.04
ENST00000460039 N/A N/A N/A N/A N/A 13.661±0.00 N/A N/A 11.207±0.00 N/A 3.964±0.00 N/A N/A N/A
ENST00000462877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.270±0.00 N/A N/A
ENST00000474393 N/A N/A N/A N/A N/A N/A N/A N/A 1.138±0.00 0.695±0.00 1.921±0.00 N/A N/A N/A
ENST00000491166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622371 N/A N/A 1.377±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202347 ENST00000365477 N/A 0.714±0.00 N/A 0.806±0.30 N/A 9.278±0.00 0.831±0.00 N/A N/A N/A N/A 2.905±0.00 N/A N/A
ENSG00000233613 ENST00000414992 N/A N/A N/A 1.205±0.00 0.156±0.00 0.365±0.00 0.488±0.00 0.303±0.00 N/A 0.276±0.00 N/A N/A N/A 0.350±0.00
ENST00000453584 N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A 0.207±0.00 1.083±0.00 0.872±0.00
ENSG00000276248 ENST00000619092 0.169±0.00 0.337±0.00 0.609±0.00 0.324±0.18 0.377±0.15 0.527±0.26 0.318±0.09 0.128±0.04 0.166±0.15 0.521±0.17 0.036±0.00 0.514±0.27 0.209±0.07 0.566±0.34
ENSG00000276916 ENST00000619338 0.237±0.00 0.431±0.00 N/A 0.629±0.15 0.163±0.05 0.593±0.00 0.343±0.00 0.145±0.00 0.312±0.00 0.652±0.00 N/A 2.593±2.29 0.952±0.16 0.533±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038497 ENSMUST00000045229 5.323±0.70 13.692±0.47 3.166±0.86 5.402±3.10 9.207±1.83 31.376±8.02 4.246±0.63 12.858±4.49 1.903±0.62 9.664±0.25 2.795±0.28 9.738±4.95 1.687±0.94 1.736±1.09
ENSMUSG00000038506 ENSMUST00000045366 2.784±0.00 8.637±4.56 N/A 5.018±2.00 N/A N/A 12.537±2.43 N/A 1.733±0.55 3.355±0.12 26.057±3.18 3.203±0.56 2.414±0.53 0.985±0.43
ENSMUST00000110838 N/A N/A N/A N/A 2.072±0.00 N/A N/A N/A 1.396±0.00 N/A N/A 5.239±0.00 1.259±0.10 0.692±0.31
ENSMUST00000110839 N/A N/A N/A N/A N/A N/A 5.704±0.00 N/A 0.954±0.00 N/A N/A 5.564±0.00 N/A N/A
ENSMUST00000110840 5.749±1.19 10.862±1.98 5.848±0.87 5.115±0.81 4.123±0.53 12.292±0.10 6.395±1.61 9.001±1.59 3.992±1.02 8.023±1.02 N/A 10.088±5.25 4.209±1.60 N/A
ENSMUSG00000089026 ENSMUST00000158401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.007±0.00 105.160±0.00 N/A N/A

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