C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, alpha 2/delta subunit 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151062 CACNA2D4 9606 - 12:1791957-1918836 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000280663 CACNA2D4-002 1791963-1918666 retained_intron
  ENST00000382722 CACNA2D4-001 1791957-1918836 protein_coding
  ENST00000444595 CACNA2D4-003 1792773-1918637 nonsense_mediated_decay
  ENST00000536818 CACNA2D4-008 1795336-1797524 retained_intron
  ENST00000536846 CACNA2D4-019 1793614-1811720 protein_coding
  ENST00000537784 CACNA2D4-005 1791963-1854037 nonsense_mediated_decay
  ENST00000537923 CACNA2D4-010 1795673-1811740 nonsense_mediated_decay
  ENST00000538027 CACNA2D4-018 1793603-1811760 protein_coding
  ENST00000538450 CACNA2D4-006 1793043-1811791 protein_coding
  ENST00000539048 CACNA2D4-016 1844425-1874627 processed_transcript
  ENST00000540728 CACNA2D4-012 1800207-1811770 retained_intron
  ENST00000541331 CACNA2D4-013 1800180-1811761 retained_intron
  ENST00000541444 CACNA2D4-015 1793523-1797660 retained_intron
  ENST00000541616 CACNA2D4-007 1800007-1800756 retained_intron
  ENST00000542340 CACNA2D4-011 1800228-1811798 retained_intron
  ENST00000543405 CACNA2D4-014 1795060-1797557 retained_intron
  ENST00000545595 CACNA2D4-004 1792802-1811738 nonsense_mediated_decay
  ENST00000585385 CACNA2D4-009 1793508-1811760 nonsense_mediated_decay
  ENST00000585708 CACNA2D4-026 1795143-1915227 protein_coding
  ENST00000585732 CACNA2D4-023 1809379-1918546 protein_coding
  ENST00000586184 CACNA2D4-025 1795109-1918473 protein_coding
  ENST00000587995 CACNA2D4-022 1793169-1918531 protein_coding
  ENST00000588077 CACNA2D4-024 1793566-1915227 protein_coding
  ENST00000588896 CACNA2D4-020 1795114-1795949 retained_intron
  ENST00000589502 CACNA2D4-017 1799676-1811727 retained_intron
  ENST00000590880 CACNA2D4-021 1884030-1884879 retained_intron
  ENST00000611131 CACNA2D4-201 1791957-1918704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000537784ENST00000538450ENST00000543405ENST00000545595ENST00000585385ENST00000585732ENST00000586184ENST00000588896ENST00000589502ENST00000590880
Transcript ID Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000537784 0.054±0.00 N/A N/A 0.138±0.00 N/A 0.042±0.01 N/A 0.213±0.00 0.785±0.00
ENST00000538450 N/A N/A N/A N/A N/A N/A 4.349±0.00 0.643±0.00 3.924±0.00
ENST00000543405 N/A N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A
ENST00000545595 N/A 0.246±0.00 N/A N/A N/A N/A 0.898±0.00 N/A N/A
ENST00000585385 N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A
ENST00000585732 N/A 0.064±0.00 N/A N/A N/A N/A N/A 0.134±0.00 N/A
ENST00000586184 N/A N/A N/A N/A N/A N/A N/A 0.135±0.01 N/A
ENST00000588896 N/A 0.795±0.00 1.114±0.00 N/A N/A 0.205±0.00 N/A N/A N/A
ENST00000589502 0.304±0.00 N/A N/A N/A N/A N/A 1.641±0.00 N/A N/A
ENST00000590880 0.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XJ CIL_0003XJ_0002 CGP 12:1791957-1918836

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005891 IDA voltage-gated calcium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023886 cacna2d4b calcium channel, voltage-dependent, alpha 2/delta subunit 4b protein_coding Danio_rerio
ENSDARG00000026855 cacna2d4a calcium channel, voltage-dependent, alpha 2/delta subunit 4a protein_coding Danio_rerio
ENSMUSG00000041460 Cacna2d4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 protein_coding Mus_musculus

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