C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, alpha 2/delta subunit 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041460 Cacna2d4 10090 + 6:119236526-119352407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037434 Cacna2d4-001 119236526-119352407 protein_coding
  ENSMUST00000185965 Cacna2d4-010 119332562-119347238 processed_transcript
  ENSMUST00000186176 Cacna2d4-005 119250015-119271933 processed_transcript
  ENSMUST00000186203 Cacna2d4-009 119330802-119338140 retained_intron
  ENSMUST00000186622 Cacna2d4-003 119236595-119350458 protein_coding
  ENSMUST00000186702 Cacna2d4-008 119330769-119344042 processed_transcript
  ENSMUST00000187222 Cacna2d4-006 119267538-119271231 processed_transcript
  ENSMUST00000188239 Cacna2d4-004 119248784-119301418 processed_transcript
  ENSMUST00000190015 Cacna2d4-002 119236527-119277124 retained_intron
  ENSMUST00000191331 Cacna2d4-007 119267739-119271274 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037434ENSMUST00000185965ENSMUST00000186203ENSMUST00000186622ENSMUST00000186702ENSMUST00000188239ENSMUST00000190015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037434 0.045±0.00 0.032±0.02 N/A 0.203±0.15 N/A 0.044±0.02 0.018±0.00 0.043±0.02 0.015±0.01 0.534±0.00 0.328±0.00 0.057±0.02 0.021±0.01 N/A
ENSMUST00000185965 N/A N/A N/A N/A N/A 0.264±0.00 N/A 0.143±0.00 N/A N/A N/A 0.060±0.00 N/A N/A
ENSMUST00000186203 N/A 0.244±0.10 N/A N/A 1.699±0.00 N/A N/A 0.361±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000186622 0.023±0.00 0.040±0.00 N/A N/A N/A 0.041±0.03 0.008±0.00 0.015±0.00 0.018±0.01 0.325±0.00 0.509±0.17 0.036±0.00 N/A N/A
ENSMUST00000186702 N/A N/A N/A N/A N/A 0.104±0.00 0.133±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188239 0.105±0.04 0.088±0.04 0.013±0.00 0.064±0.00 N/A 0.061±0.03 0.023±0.01 0.053±0.01 0.054±0.06 N/A N/A 0.481±0.32 0.020±0.00 N/A
ENSMUST00000190015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XJ CIL_0003XJ_0003 CGP 6:119236526-119352407

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005891 IEA voltage-gated calcium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023886 cacna2d4b calcium channel, voltage-dependent, alpha 2/delta subunit 4b protein_coding Danio_rerio
ENSDARG00000026855 cacna2d4a calcium channel, voltage-dependent, alpha 2/delta subunit 4a protein_coding Danio_rerio
ENSG00000151062 CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 protein_coding Homo_sapiens

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