C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003XJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000026855-ENSDARG00000026855 CGP 7955 4:19174092-19230701
GeneTranscriptPositionBiotype
ENSDARG00000026855 (cacna2d4a)
calcium channel, voltage-dependent, alpha 2/delta subunit 4a 		ENSDART00000048023 (cacna2d4a-201) 19174092-19230701 protein_coding
ENSDART00000136069 (cacna2d4a-001) 19207153-19228511 protein_coding
ENSDARG00000045483 (lrtm2)
leucine-rich repeats and transmembrane domains 2 		ENSDART00000066893 (lrtm2-201) 19195248-19201218 protein_coding
ENSDART00000138820 (lrtm2-001) 19198787-19201416 protein_coding
CIL_0003XJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151062-ENSG00000151062 CGP 9606 12:1791957-1918836
GeneTranscriptPositionBiotype
ENSG00000166159 (LRTM2)
leucine-rich repeats and transmembrane domains 2 		ENST00000299194 (LRTM2-001) 1820529-1836752 protein_coding
ENST00000535041 (LRTM2-002) 1820631-1836399 protein_coding
ENST00000539859 (LRTM2-006) 1820584-1827816 processed_transcript
ENST00000540378 (LRTM2-010) 1820574-1831230 processed_transcript
ENST00000542529 (LRTM2-005) 1820510-1827797 processed_transcript
ENST00000543694 (LRTM2-004) 1823236-1831154 protein_coding
ENST00000543730 (LRTM2-009) 1820510-1836748 processed_transcript
ENST00000543818 (LRTM2-201) 1820267-1836752 protein_coding
ENST00000544489 (LRTM2-007) 1820572-1830968 processed_transcript
ENST00000545157 (LRTM2-011) 1820483-1827728 processed_transcript
ENST00000546157 (LRTM2-008) 1827563-1831101 processed_transcript
ENST00000546167 (LRTM2-003) 1822082-1831146 protein_coding
ENSG00000256706 (RP5-1096D14.3)
 ENST00000544163 (RP5-1096D14.3-001) 1917951-1922867 antisense
CIL_0003XJ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041460-ENSMUSG00000041460 CGP 10090 6:119236526-119352407
GeneTranscriptPositionBiotype
ENSMUSG00000041460 (Cacna2d4)
calcium channel, voltage-dependent, alpha 2/delta subunit 4 		ENSMUST00000037434 (Cacna2d4-001) 119236526-119352407 protein_coding
ENSMUST00000185965 (Cacna2d4-010) 119332562-119347238 processed_transcript
ENSMUST00000186176 (Cacna2d4-005) 119250015-119271933 processed_transcript
ENSMUST00000186203 (Cacna2d4-009) 119330802-119338140 retained_intron
ENSMUST00000186622 (Cacna2d4-003) 119236595-119350458 protein_coding
ENSMUST00000186702 (Cacna2d4-008) 119330769-119344042 processed_transcript
ENSMUST00000187222 (Cacna2d4-006) 119267538-119271231 processed_transcript
ENSMUST00000188239 (Cacna2d4-004) 119248784-119301418 processed_transcript
ENSMUST00000190015 (Cacna2d4-002) 119236527-119277124 retained_intron
ENSMUST00000191331 (Cacna2d4-007) 119267739-119271274 processed_transcript
ENSMUSG00000055003 (Lrtm2)
leucine-rich repeats and transmembrane domains 2 		ENSMUST00000068351 (Lrtm2-001) 119315133-119330766 protein_coding
ENSMUST00000112756 (Lrtm2-002) 119315133-119330757 protein_coding
ENSMUST00000124192 (Lrtm2-003) 119323649-119329204 protein_coding
ENSMUST00000168793 (Lrtm2-201) 119315133-119329204 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XJ_0001ENSDARG00000026855ENSDART00000048023ENSDART00000136069ENSDARG00000045483ENSDART00000066893ENSDART00000138820CIL_0003XJ_0002ENSG00000166159ENST00000299194ENST00000535041ENST00000539859ENST00000540378ENST00000542529ENST00000543694ENST00000543730ENST00000543818ENST00000544489ENST00000545157ENST00000546157ENST00000546167ENSG00000256706ENST00000544163CIL_0003XJ_0003ENSMUSG00000041460ENSMUST00000037434ENSMUST00000185965ENSMUST00000186176ENSMUST00000186203ENSMUST00000186622ENSMUST00000186702ENSMUST00000187222ENSMUST00000188239ENSMUST00000190015ENSMUST00000191331ENSMUSG00000055003ENSMUST00000068351ENSMUST00000112756ENSMUST00000124192ENSMUST00000168793
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XJ_0001ENSDARG00000026855ENSDART00000048023ENSDART00000136069ENSDARG00000045483ENSDART00000066893ENSDART00000138820CIL_0003XJ_0002ENSG00000166159ENST00000299194ENST00000535041ENST00000543730ENST00000543818ENST00000546167ENSG00000256706ENST00000544163CIL_0003XJ_0003ENSMUSG00000041460ENSMUST00000037434ENSMUST00000185965ENSMUST00000186203ENSMUST00000186622ENSMUST00000186702ENSMUST00000188239ENSMUST00000190015ENSMUSG00000055003ENSMUST00000068351ENSMUST00000112756ENSMUST00000124192ENSMUST00000168793
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026855 ENSDART00000048023 N/A N/A N/A 0.102±0.02 N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136069 N/A N/A N/A 0.058±0.01 N/A N/A N/A 0.095±0.00 0.021±0.00 N/A 0.032±0.00 N/A N/A N/A
ENSDARG00000045483 ENSDART00000066893 N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A N/A N/A N/A
ENSDART00000138820 N/A N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166159 ENST00000299194 N/A N/A N/A 0.887±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535041 N/A N/A N/A 0.956±0.01 N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A
ENST00000539859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543730 N/A N/A N/A N/A 0.010±0.00 0.018±0.00 N/A N/A N/A N/A N/A 0.021±0.00 0.028±0.00 0.082±0.00
ENST00000543818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.05
ENST00000544489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546167 N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000256706 ENST00000544163 N/A 0.144±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.308±0.00 0.160±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041460 ENSMUST00000037434 0.045±0.00 0.032±0.02 N/A 0.203±0.15 N/A 0.044±0.02 0.018±0.00 0.043±0.02 0.015±0.01 0.534±0.00 0.328±0.00 0.057±0.02 0.021±0.01 N/A
ENSMUST00000185965 N/A N/A N/A N/A N/A 0.264±0.00 N/A 0.143±0.00 N/A N/A N/A 0.060±0.00 N/A N/A
ENSMUST00000186176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186203 N/A 0.244±0.10 N/A N/A 1.699±0.00 N/A N/A 0.361±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000186622 0.023±0.00 0.040±0.00 N/A N/A N/A 0.041±0.03 0.008±0.00 0.015±0.00 0.018±0.01 0.325±0.00 0.509±0.17 0.036±0.00 N/A N/A
ENSMUST00000186702 N/A N/A N/A N/A N/A 0.104±0.00 0.133±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188239 0.105±0.04 0.088±0.04 0.013±0.00 0.064±0.00 N/A 0.061±0.03 0.023±0.01 0.053±0.01 0.054±0.06 N/A N/A 0.481±0.32 0.020±0.00 N/A
ENSMUST00000190015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00
ENSMUST00000191331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055003 ENSMUST00000068351 N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 N/A N/A 0.097±0.00 0.164±0.04 N/A N/A
ENSMUST00000112756 0.150±0.10 N/A 0.039±0.00 6.991±4.08 0.238±0.10 0.034±0.00 0.192±0.03 0.432±0.08 0.020±0.00 1.616±0.27 0.628±0.33 0.288±0.12 0.067±0.06 N/A
ENSMUST00000124192 N/A N/A N/A N/A N/A 0.220±0.00 N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A
ENSMUST00000168793 0.286±0.16 0.060±0.05 0.023±0.00 N/A 0.123±0.05 0.085±0.03 0.150±0.08 0.959±0.22 0.034±0.03 0.731±0.00 0.457±0.19 0.253±0.18 0.018±0.01 0.043±0.01

Loading