C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: decapping mRNA 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151065 DCP1B 9606 - 12:1946054-2004535 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000280665 DCP1B-002 1946054-2004511 protein_coding
  ENST00000535873 DCP1B-001 1991456-2004535 protein_coding
  ENST00000536665 DCP1B-005 1952777-1966141 processed_transcript
  ENST00000537725 DCP1B-004 1961316-2004427 processed_transcript
  ENST00000540622 DCP1B-007 1950036-1967910 protein_coding
  ENST00000541700 DCP1B-006 1952777-2004467 processed_transcript
  ENST00000543381 DCP1B-003 1946152-2004470 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000280665ENST00000535873ENST00000536665ENST00000537725ENST00000540622ENST00000543381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000280665 2.223±0.00 2.150±0.00 0.961±0.00 1.729±0.46 1.709±1.46 3.588±2.12 N/A 2.254±1.38 1.624±0.33 3.832±0.00 2.466±1.00 5.645±2.57 3.053±0.70 13.611±0.71
ENST00000535873 N/A N/A 0.500±0.00 0.329±0.09 0.738±0.52 0.708±0.00 0.367±0.00 0.573±0.15 3.411±0.00 0.972±0.00 N/A 0.782±0.05 N/A N/A
ENST00000536665 N/A N/A N/A N/A N/A 2.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537725 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.948±0.00 N/A N/A N/A N/A
ENST00000540622 N/A N/A 0.810±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.557±0.00
ENST00000543381 N/A N/A N/A N/A N/A N/A 0.248±0.00 N/A N/A N/A 1.691±0.00 N/A 0.830±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XI CIL_0003XI_0002 CGP 12:1820267-2004535
CIL_0003XH CIL_0003XH_0002 CGP 12:1946054-2697950

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016787 IEA hydrolase activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045484 dcp1b DCP1 decapping enzyme homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000041477 Dcp1b DCP1 decapping enzyme homolog B (S. cerevisiae) protein_coding Mus_musculus

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