C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: decapping mRNA 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000280665 DCP1B-002 ENSG00000151065 9606 - 12:1946054-2004511 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000280665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000280665 2.223±0.00 2.150±0.00 0.961±0.00 1.729±0.46 1.709±1.46 3.588±2.12 2.254±1.38 1.624±0.33 3.832±0.00 2.466±1.00 5.645±2.57 3.053±0.70 13.611±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XI CIL_0003XI_0002 CGP 12:1820267-2004535
CIL_0003XH CIL_0003XH_0002 CGP 12:1946054-2697950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016787 IEA hydrolase activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112777 Dcp1b-001 protein_coding Mus_musculus 0 797
ENSMUST00000073909 Dcp1b-002 protein_coding Mus_musculus 0 791
ENSMUST00000149651 Dcp1b-003 retained_intron Mus_musculus 0 398

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