C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC condensin II complex, subunit D3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151503 NCAPD3 9606 - 11:134150119-134225454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000525432 NCAPD3-015 134156875-134158049 retained_intron
  ENST00000525485 NCAPD3-008 134220569-134224545 protein_coding
  ENST00000525964 NCAPD3-003 134152847-134224216 nonsense_mediated_decay
  ENST00000526422 NCAPD3-006 134223093-134224532 protein_coding
  ENST00000526787 NCAPD3-016 134150119-134154049 processed_transcript
  ENST00000527944 NCAPD3-013 134159890-134168472 protein_coding
  ENST00000528065 NCAPD3-010 134208879-134209734 retained_intron
  ENST00000530396 NCAPD3-012 134161780-134178075 protein_coding
  ENST00000532445 NCAPD3-007 134223447-134225454 protein_coding
  ENST00000533155 NCAPD3-009 134208871-134223941 nonsense_mediated_decay
  ENST00000534227 NCAPD3-005 134220686-134225454 protein_coding
  ENST00000534290 NCAPD3-011 134178483-134178914 retained_intron
  ENST00000534532 NCAPD3-002 134152434-134224532 nonsense_mediated_decay
  ENST00000534548 NCAPD3-001 134152445-134223991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryENST00000525964ENST00000534532ENST00000534548
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000525964 N/A N/A 2.306±0.00 N/A N/A N/A N/A 1.815±0.00 N/A N/A
ENST00000534532 N/A N/A N/A N/A N/A N/A N/A 1.680±0.00 N/A N/A
ENST00000534548 4.132±0.00 1.718±0.00 3.130±0.31 4.576±0.00 3.023±0.00 2.569±0.79 1.778±0.00 N/A 1.556±0.00 6.752±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004R4 CIL_0004R4_0003 CGP 11:133908564-134152001

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000793 IEA condensed chromosome
GO:0000799 IEA nuclear condensin complex
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007076 IEA mitotic chromosome condensation
GO:0016020 IDA membrane
GO:0031618 IDA nuclear pericentric heterochromatin
GO:0035064 IDA methylated histone binding
GO:0042585 IEA germinal vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034773 ncapd3 non-SMC condensin II complex, subunit D3 protein_coding Danio_rerio
ENSMUSG00000035024 Ncapd3 non-SMC condensin II complex, subunit D3 protein_coding Mus_musculus

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