C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004R4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000033845-ENSDARG00000086037 CGP 7955 15:18032303-18217754
GeneTranscriptPositionBiotype
ENSDARG00000033845 (igsf9ba)
immunoglobulin superfamily, member 9Ba 		ENSDART00000092705 (igsf9ba-201) 18037651-18122130 protein_coding
ENSDART00000138895 (igsf9ba-001) 18032303-18150997 protein_coding
ENSDART00000152749 (igsf9ba-002) 18036433-18038967 processed_transcript
ENSDARG00000086037 (jam3a)
junctional adhesion molecule 3a 		ENSDART00000123815 (jam3a-001) 18194297-18217754 protein_coding
ENSDART00000125077 (jam3a-201) 18201227-18216625 protein_coding
ENSDARG00000092183 (si:dkey-287f10.2)
si:dkey-287f10.2 		ENSDART00000137336 (si:dkey-287f10.2-002) 18083310-18088241 processed_transcript
ENSDART00000141012 (si:dkey-287f10.2-001) 18083302-18088288 processed_transcript
ENSDARG00000097206 (si:ch211-66o10.5)
si:ch211-66o10.5 		ENSDART00000155777 (si:ch211-66o10.5-001) 18185296-18186597 lincRNA
ENSDARG00000097663 (si:ch211-66o10.6)
si:ch211-66o10.6 		ENSDART00000156873 (si:ch211-66o10.6-001) 18188086-18191831 lincRNA
CIL_0004R4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069467-ENSDARG00000061794 CGP 7955 21:23979871-24324712
GeneTranscriptPositionBiotype
ENSDARG00000061794 (jam3b)
junctional adhesion molecule 3b 		ENSDART00000088546 (jam3b-001) 24262691-24324712 protein_coding
ENSDART00000128297 (jam3b-201) 24312005-24321614 protein_coding
ENSDARG00000069467 (igsf9bb)
immunoglobulin superfamily, member 9Bb 		ENSDART00000101136 (igsf9bb-201) 23979871-24142938 protein_coding
ENSDART00000142907 (igsf9bb-001) 23980909-24143175 protein_coding
CIL_0004R4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000080854-ENSG00000166086 CGP 9606 11:133908564-134152001
GeneTranscriptPositionBiotype
ENSG00000080854 (IGSF9B)
immunoglobulin superfamily, member 9B 		ENST00000321016 (IGSF9B-201) 133919039-133956754 protein_coding
ENST00000526663 (IGSF9B-003) 133944284-133952216 protein_coding
ENST00000527648 (IGSF9B-006) 133922576-133938100 retained_intron
ENST00000530957 (IGSF9B-008) 133909183-133912118 processed_transcript
ENST00000533160 (IGSF9B-004) 133937407-133946292 protein_coding
ENST00000533871 (IGSF9B-002) 133908564-133956985 protein_coding
ENST00000564347 (IGSF9B-007) 133908564-133912362 processed_transcript
ENSG00000166086 (JAM3)
junctional adhesion molecule 3 		ENST00000299106 (JAM3-001) 134068925-134152001 protein_coding
ENST00000441717 (JAM3-002) 134069071-134151751 protein_coding
ENST00000524969 (JAM3-006) 134126339-134144996 processed_transcript
ENST00000531302 (JAM3-008) 134069085-134145431 retained_intron
ENST00000532165 (JAM3-007) 134139640-134145012 processed_transcript
ENST00000532252 (JAM3-004) 134069071-134144826 nonsense_mediated_decay
ENST00000533711 (JAM3-010) 134147798-134149208 retained_intron
ENST00000534549 (JAM3-005) 134069071-134144934 protein_coding
ENSG00000204241 (RP11-713P17.3)
 ENST00000527712 (RP11-713P17.3-004) 134032805-134046849 lincRNA
ENST00000529070 (RP11-713P17.3-002) 134032652-134038975 lincRNA
ENST00000531938 (RP11-713P17.3-007) 134037109-134039939 lincRNA
ENST00000532327 (RP11-713P17.3-003) 134038643-134041248 lincRNA
ENST00000532706 (RP11-713P17.3-005) 134032387-134039830 lincRNA
ENST00000533091 (RP11-713P17.3-006) 134032796-134040267 lincRNA
ENST00000533922 (RP11-713P17.3-001) 134032272-134041248 lincRNA
ENSG00000254481 (PTP4A2P2)
protein tyrosine phosphatase type IVA, member 2 pseudogene 2 		ENST00000534330 (PTP4A2P2-001) 134123828-134124329 processed_pseudogene
ENSG00000254648 (RP11-713P17.4)
 ENST00000526377 (RP11-713P17.4-001) 134035832-134037107 lincRNA
ENSG00000255406 (RP11-713P17.5)
 ENST00000532272 (RP11-713P17.5-001) 134026987-134028118 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004R4_0001ENSDARG00000033845ENSDART00000092705ENSDART00000138895ENSDART00000152749ENSDARG00000086037ENSDART00000123815ENSDART00000125077ENSDARG00000092183ENSDART00000137336ENSDART00000141012ENSDARG00000097206ENSDART00000155777ENSDARG00000097663ENSDART00000156873CIL_0004R4_0002ENSDARG00000061794ENSDART00000088546ENSDART00000128297ENSDARG00000069467ENSDART00000101136ENSDART00000142907CIL_0004R4_0003ENSG00000080854ENST00000321016ENST00000526663ENST00000527648ENST00000530957ENST00000533160ENST00000533871ENST00000564347ENSG00000166086ENST00000299106ENST00000441717ENST00000524969ENST00000531302ENST00000532165ENST00000532252ENST00000533711ENST00000534549ENSG00000204241ENST00000527712ENST00000529070ENST00000531938ENST00000532327ENST00000532706ENST00000533091ENST00000533922ENSG00000254481ENST00000534330ENSG00000254648ENST00000526377ENSG00000255406ENST00000532272
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004R4_0001ENSDARG00000033845ENSDART00000092705ENSDART00000138895ENSDARG00000086037ENSDART00000123815ENSDARG00000092183ENSDART00000137336ENSDART00000141012ENSDARG00000097206ENSDART00000155777ENSDARG00000097663ENSDART00000156873CIL_0004R4_0002ENSDARG00000061794ENSDART00000088546ENSDART00000128297ENSDARG00000069467ENSDART00000101136ENSDART00000142907CIL_0004R4_0003ENSG00000080854ENST00000321016ENST00000527648ENST00000530957ENST00000533160ENST00000533871ENST00000564347ENSG00000166086ENST00000299106ENST00000441717ENSG00000204241ENST00000527712ENST00000529070ENST00000531938ENST00000532327ENST00000532706ENST00000533091ENST00000533922ENSG00000254481ENST00000534330ENSG00000254648ENST00000526377ENSG00000255406ENST00000532272
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000033845 ENSDART00000092705 N/A N/A N/A 4.560±0.00 N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138895 N/A N/A N/A 4.264±0.00 N/A N/A 0.051±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A
ENSDART00000152749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000086037 ENSDART00000123815 N/A N/A N/A 11.583±5.31 N/A N/A 5.640±1.57 0.767±0.31 0.123±0.00 N/A 2.616±0.00 N/A N/A N/A
ENSDART00000125077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000092183 ENSDART00000137336 N/A N/A N/A N/A N/A N/A 0.162±0.00 0.171±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000141012 N/A N/A N/A 0.531±0.37 N/A N/A 0.561±0.35 0.527±0.32 N/A N/A N/A N/A N/A N/A
ENSDARG00000097206 ENSDART00000155777 N/A N/A N/A 0.199±0.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000097663 ENSDART00000156873 N/A N/A N/A 1.031±0.36 N/A N/A 0.288±0.00 N/A 0.151±0.00 N/A 0.116±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061794 ENSDART00000088546 N/A N/A N/A 4.598±1.46 N/A N/A 28.839±1.66 1.702±1.12 0.062±0.00 N/A 7.081±0.00 N/A N/A N/A
ENSDART00000128297 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A
ENSDARG00000069467 ENSDART00000101136 N/A N/A N/A 0.597±0.55 N/A N/A 0.264±0.00 0.030±0.00 0.008±0.00 N/A N/A N/A N/A N/A
ENSDART00000142907 N/A N/A N/A 4.219±3.08 N/A N/A 0.523±0.00 N/A N/A N/A 0.402±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080854 ENST00000321016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A
ENST00000526663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527648 N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A 0.200±0.00 1.202±0.00 N/A 0.034±0.00 N/A
ENST00000530957 N/A N/A N/A N/A N/A N/A N/A 0.449±0.00 0.159±0.00 N/A N/A 0.763±0.27 N/A 1.857±0.00
ENST00000533160 N/A N/A N/A N/A 0.929±0.17 1.089±0.00 N/A N/A 0.115±0.00 N/A N/A N/A 0.212±0.00 N/A
ENST00000533871 0.083±0.00 N/A N/A N/A 0.083±0.00 0.286±0.00 0.149±0.00 0.089±0.00 0.935±0.00 N/A N/A 0.209±0.00 N/A 0.156±0.03
ENST00000564347 N/A N/A N/A N/A 1.065±0.00 0.755±0.00 N/A 0.427±0.25 0.052±0.00 0.276±0.03 N/A 0.406±0.05 0.297±0.25 0.633±0.00
ENSG00000166086 ENST00000299106 N/A N/A N/A 10.955±0.00 3.697±0.00 5.018±0.00 3.309±0.00 N/A 25.327±0.00 6.550±2.02 0.542±0.00 11.309±8.65 23.753±14.71 21.852±11.09
ENST00000441717 15.058±0.00 13.295±0.00 N/A 28.310±0.00 6.393±0.98 28.985±0.00 6.254±0.00 6.586±0.00 N/A 19.850±0.00 3.707±0.00 8.733±0.00 N/A 29.252±0.00
ENST00000524969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204241 ENST00000527712 N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A 0.366±0.00 N/A N/A N/A N/A N/A
ENST00000529070 0.030±0.00 0.167±0.00 0.074±0.00 0.034±0.00 0.047±0.02 N/A 0.076±0.00 0.052±0.00 0.221±0.00 N/A 0.063±0.00 0.114±0.02 0.059±0.01 N/A
ENST00000531938 N/A N/A N/A N/A 0.264±0.00 N/A N/A N/A N/A N/A N/A N/A 0.223±0.00 1.347±0.00
ENST00000532327 N/A 0.293±0.00 N/A 0.060±0.00 N/A 0.064±0.00 0.045±0.00 0.022±0.00 N/A N/A N/A 0.221±0.17 0.117±0.03 0.344±0.10
ENST00000532706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A
ENST00000533091 N/A N/A 0.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.324±0.00 N/A
ENST00000533922 N/A N/A N/A 0.270±0.00 0.101±0.00 0.238±0.00 N/A N/A N/A N/A N/A 0.116±0.00 N/A 0.097±0.00
ENSG00000254481 ENST00000534330 0.103±0.00 0.634±0.00 1.882±0.00 0.577±0.09 0.117±0.01 0.024±0.00 0.052±0.03 0.026±0.00 0.458±0.00 0.640±0.11 0.117±0.00 1.043±1.55 0.072±0.02 N/A
ENSG00000254648 ENST00000526377 0.269±0.00 0.440±0.00 N/A 0.308±0.00 0.297±0.24 0.156±0.00 0.076±0.00 0.140±0.07 0.351±0.33 0.316±0.00 0.017±0.00 0.380±0.21 0.058±0.00 0.301±0.06
ENSG00000255406 ENST00000532272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.153±0.00 N/A 0.433±0.00

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