C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 30 (zinc transporter), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152683 SLC30A6 9606 + 2:32165841-32224379 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000282587 SLC30A6-001 32165864-32224379 protein_coding
  ENST00000357055 SLC30A6-201 32165841-32224112 protein_coding
  ENST00000379343 SLC30A6-002 32165864-32221524 protein_coding
  ENST00000406369 SLC30A6-005 32165869-32224099 protein_coding
  ENST00000435660 SLC30A6-202 32165841-32224112 protein_coding
  ENST00000440718 SLC30A6-006 32165864-32197784 protein_coding
  ENST00000449777 SLC30A6-004 32165864-32221740 nonsense_mediated_decay
  ENST00000454324 SLC30A6-003 32165864-32221666 nonsense_mediated_decay
  ENST00000457724 SLC30A6-007 32165882-32192951 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000282587ENST00000357055ENST00000379343ENST00000406369ENST00000435660ENST00000440718
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000282587 0.905±0.00 N/A 0.582±0.00 1.888±0.13 0.500±0.00 0.793±0.40 1.870±0.22 1.765±0.00 0.640±0.43 N/A 1.560±0.48 0.807±0.00 1.619±0.00
ENST00000357055 N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A 1.311±0.07 0.681±0.00 2.043±0.00 N/A
ENST00000379343 N/A N/A 0.876±0.00 N/A N/A N/A N/A 2.457±0.00 N/A N/A N/A N/A N/A
ENST00000406369 1.294±0.00 0.690±0.00 0.502±0.00 1.809±0.00 0.513±0.00 0.598±0.00 N/A N/A N/A 0.204±0.00 2.110±1.21 2.794±1.08 1.436±0.52
ENST00000435660 1.494±0.00 1.314±0.00 0.259±0.00 1.351±0.00 0.654±0.07 0.806±0.00 1.453±0.84 0.957±0.00 0.409±0.00 N/A 0.695±0.00 1.001±0.32 0.795±0.21
ENST00000440718 N/A N/A 4.694±0.00 N/A N/A N/A 4.502±0.00 9.926±0.00 N/A N/A 10.739±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VK CIL_0000VK_0001 CGP 2:32063611-32224379
CIL_0000MX CIL_0000MX_0001 CGP 2:32165841-32265854

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005385 IEA zinc ion transmembrane transporter activity
GO:0005739 IEA mitochondrion
GO:0005794 IDA Golgi apparatus
GO:0006812 IEA cation transport
GO:0006829 IEA zinc ion transport
GO:0006895 IEA Golgi to endosome transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0055085 TAS:IEA transmembrane transport
GO:0071577 IEA zinc ion transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077368 slc30a6 solute carrier family 30 (zinc transporter), member 6 protein_coding Danio_rerio
ENSMUSG00000024069 Slc30a6 solute carrier family 30 (zinc transporter), member 6 protein_coding Mus_musculus

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