C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152683-ENSG00000091106 CGP 9606 2:32165841-32265854
GeneTranscriptPositionBiotype
ENSG00000091106 (NLRC4)
NLR family, CARD domain containing 4 		ENST00000342905 (NLRC4-003) 32224455-32265732 protein_coding
ENST00000360906 (NLRC4-002) 32224453-32265732 protein_coding
ENST00000402280 (NLRC4-004) 32224454-32264880 protein_coding
ENST00000404025 (NLRC4-001) 32224456-32265854 protein_coding
ENSG00000152683 (SLC30A6)
solute carrier family 30 (zinc transporter), member 6 		ENST00000282587 (SLC30A6-001) 32165864-32224379 protein_coding
ENST00000357055 (SLC30A6-201) 32165841-32224112 protein_coding
ENST00000379343 (SLC30A6-002) 32165864-32221524 protein_coding
ENST00000406369 (SLC30A6-005) 32165869-32224099 protein_coding
ENST00000435660 (SLC30A6-202) 32165841-32224112 protein_coding
ENST00000440718 (SLC30A6-006) 32165864-32197784 protein_coding
ENST00000449777 (SLC30A6-004) 32165864-32221740 nonsense_mediated_decay
ENST00000454324 (SLC30A6-003) 32165864-32221666 nonsense_mediated_decay
ENST00000457724 (SLC30A6-007) 32165882-32192951 nonsense_mediated_decay
ENSG00000201113 (RNU6-647P)
RNA, U6 small nuclear 647, pseudogene 		ENST00000364243 (RNU6-647P-201) 32214456-32214562 snRNA
ENSG00000229816 (DDX50P1)
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 1 		ENST00000438163 (DDX50P1-001) 32201600-32203999 processed_pseudogene
CIL_0000MX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024069-ENSMUSG00000039193 CGP 10090 17:74395608-74459108
GeneTranscriptPositionBiotype
ENSMUSG00000024069 (Slc30a6)
solute carrier family 30 (zinc transporter), member 6 		ENSMUST00000024870 (Slc30a6-201) 74395608-74424229 protein_coding
ENSMUST00000179074 (Slc30a6-202) 74395608-74424229 protein_coding
ENSMUSG00000039193 (Nlrc4)
NLR family, CARD domain containing 4 		ENSMUST00000052124 (Nlrc4-201) 74426295-74459108 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MX_0001ENSG00000091106ENST00000342905ENST00000360906ENST00000402280ENST00000404025ENSG00000152683ENST00000282587ENST00000357055ENST00000379343ENST00000406369ENST00000435660ENST00000440718ENST00000449777ENST00000454324ENST00000457724ENSG00000201113ENST00000364243ENSG00000229816ENST00000438163CIL_0000MX_0002ENSMUSG00000024069ENSMUST00000024870ENSMUST00000179074ENSMUSG00000039193ENSMUST00000052124
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MX_0001ENSG00000091106ENST00000342905ENST00000360906ENST00000402280ENST00000404025ENSG00000152683ENST00000282587ENST00000357055ENST00000379343ENST00000406369ENST00000435660ENST00000440718ENSG00000201113ENST00000364243ENSG00000229816ENST00000438163CIL_0000MX_0002ENSMUSG00000024069ENSMUST00000024870ENSMUST00000179074ENSMUSG00000039193ENSMUST00000052124
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091106 ENST00000342905 0.316±0.00 0.942±0.00 0.035±0.00 0.199±0.00 0.204±0.00 N/A N/A 0.327±0.05 N/A 0.376±0.00 N/A N/A N/A N/A
ENST00000360906 0.281±0.00 N/A N/A N/A 0.344±0.00 0.178±0.00 0.408±0.00 0.235±0.07 N/A 0.412±0.00 N/A 0.215±0.08 0.250±0.01 0.194±0.09
ENST00000402280 N/A N/A N/A 0.083±0.00 0.495±0.00 N/A N/A N/A 0.194±0.14 1.798±0.00 N/A 0.225±0.00 0.665±0.19 N/A
ENST00000404025 0.368±0.00 0.111±0.00 N/A N/A N/A N/A 0.123±0.00 N/A 0.243±0.00 N/A N/A N/A N/A N/A
ENSG00000152683 ENST00000282587 0.905±0.00 N/A N/A 0.582±0.00 1.888±0.13 0.500±0.00 0.793±0.40 1.870±0.22 1.765±0.00 0.640±0.43 N/A 1.560±0.48 0.807±0.00 1.619±0.00
ENST00000357055 N/A N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A 1.311±0.07 0.681±0.00 2.043±0.00 N/A
ENST00000379343 N/A N/A N/A 0.876±0.00 N/A N/A N/A N/A 2.457±0.00 N/A N/A N/A N/A N/A
ENST00000406369 1.294±0.00 0.690±0.00 N/A 0.502±0.00 1.809±0.00 0.513±0.00 0.598±0.00 N/A N/A N/A 0.204±0.00 2.110±1.21 2.794±1.08 1.436±0.52
ENST00000435660 1.494±0.00 1.314±0.00 N/A 0.259±0.00 1.351±0.00 0.654±0.07 0.806±0.00 1.453±0.84 0.957±0.00 0.409±0.00 N/A 0.695±0.00 1.001±0.32 0.795±0.21
ENST00000440718 N/A N/A N/A 4.694±0.00 N/A N/A N/A 4.502±0.00 9.926±0.00 N/A N/A 10.739±0.00 N/A N/A
ENST00000449777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201113 ENST00000364243 N/A 1.581±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229816 ENST00000438163 0.153±0.00 0.318±0.00 0.928±0.00 0.169±0.03 0.322±0.28 0.459±0.41 0.041±0.00 0.078±0.05 0.271±0.21 0.607±0.52 N/A 0.162±0.09 0.046±0.03 0.163±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024069 ENSMUST00000024870 9.501±4.58 8.951±1.50 8.728±0.68 5.622±3.36 9.966±0.50 9.790±1.60 4.285±1.30 13.106±1.77 7.324±2.01 10.419±0.29 1.557±0.28 7.820±3.57 8.422±4.67 3.350±1.86
ENSMUST00000179074 N/A 4.281±0.00 N/A N/A 10.296±0.57 N/A N/A N/A 1.308±0.00 1.470±0.00 N/A 11.315±1.33 N/A 0.821±0.00
ENSMUSG00000039193 ENSMUST00000052124 0.185±0.05 0.101±0.05 0.085±0.00 0.029±0.01 0.481±0.23 2.720±0.83 0.083±0.03 0.115±0.07 0.101±0.09 0.372±0.11 0.043±0.03 0.174±0.08 0.165±0.10 0.133±0.00

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