C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000VK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000021574-ENSG00000152683 CGP 9606 2:32063611-32224379
GeneTranscriptPositionBiotype
ENSG00000021574 (SPAST)
spastin 		ENST00000315285 (SPAST-001) 32063707-32157637 protein_coding
ENST00000345662 (SPAST-002) 32063611-32157636 protein_coding
ENST00000615843 (SPAST-201) 32063611-32157636 protein_coding
ENST00000621856 (SPAST-003) 32063968-32154496 protein_coding
ENSG00000152683 (SLC30A6)
solute carrier family 30 (zinc transporter), member 6 		ENST00000282587 (SLC30A6-001) 32165864-32224379 protein_coding
ENST00000357055 (SLC30A6-201) 32165841-32224112 protein_coding
ENST00000379343 (SLC30A6-002) 32165864-32221524 protein_coding
ENST00000406369 (SLC30A6-005) 32165869-32224099 protein_coding
ENST00000435660 (SLC30A6-202) 32165841-32224112 protein_coding
ENST00000440718 (SLC30A6-006) 32165864-32197784 protein_coding
ENST00000449777 (SLC30A6-004) 32165864-32221740 nonsense_mediated_decay
ENST00000454324 (SLC30A6-003) 32165864-32221666 nonsense_mediated_decay
ENST00000457724 (SLC30A6-007) 32165882-32192951 nonsense_mediated_decay
ENSG00000201113 (RNU6-647P)
RNA, U6 small nuclear 647, pseudogene 		ENST00000364243 (RNU6-647P-201) 32214456-32214562 snRNA
ENSG00000229816 (DDX50P1)
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 1 		ENST00000438163 (DDX50P1-001) 32201600-32203999 processed_pseudogene
ENSG00000272716 (RP11-563N4.1)
 ENST00000608489 (RP11-563N4.1-001) 32165046-32165757 lincRNA
CIL_0000VK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024068-ENSMUSG00000024069 CGP 10090 17:74338987-74424229
GeneTranscriptPositionBiotype
ENSMUSG00000024068 (Spast)
spastin 		ENSMUST00000024869 (Spast-201) 74338987-74391113 protein_coding
ENSMUSG00000024069 (Slc30a6)
solute carrier family 30 (zinc transporter), member 6 		ENSMUST00000024870 (Slc30a6-201) 74395608-74424229 protein_coding
ENSMUST00000179074 (Slc30a6-202) 74395608-74424229 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VK_0001ENSG00000021574ENST00000315285ENST00000345662ENST00000615843ENST00000621856ENSG00000152683ENST00000282587ENST00000357055ENST00000379343ENST00000406369ENST00000435660ENST00000440718ENST00000449777ENST00000454324ENST00000457724ENSG00000201113ENST00000364243ENSG00000229816ENST00000438163ENSG00000272716ENST00000608489CIL_0000VK_0002ENSMUSG00000024068ENSMUST00000024869ENSMUSG00000024069ENSMUST00000024870ENSMUST00000179074
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VK_0001ENSG00000021574ENST00000315285ENST00000345662ENST00000615843ENST00000621856ENSG00000152683ENST00000282587ENST00000357055ENST00000379343ENST00000406369ENST00000435660ENST00000440718ENSG00000201113ENST00000364243ENSG00000229816ENST00000438163ENSG00000272716ENST00000608489CIL_0000VK_0002ENSMUSG00000024068ENSMUST00000024869ENSMUSG00000024069ENSMUST00000024870ENSMUST00000179074
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000021574 ENST00000315285 2.064±0.00 1.067±0.00 N/A N/A 0.657±0.00 1.396±0.00 0.509±0.00 1.089±0.67 0.775±0.35 N/A 1.508±0.00 3.085±0.00 0.973±0.26 3.905±0.00
ENST00000345662 0.579±0.00 1.034±0.00 N/A 3.598±0.06 1.525±0.88 1.457±0.00 0.638±0.13 N/A 0.586±0.10 1.286±0.08 1.049±0.52 2.517±1.53 1.559±0.46 0.786±0.21
ENST00000615843 N/A N/A N/A 2.108±0.00 N/A 0.878±0.00 N/A 1.722±0.00 N/A N/A N/A 1.973±0.00 N/A 3.658±0.00
ENST00000621856 N/A N/A 3.771±0.00 7.095±0.00 4.685±0.00 6.864±0.00 2.675±0.00 2.474±0.00 5.202±0.00 3.834±0.00 2.418±0.00 7.261±0.00 N/A 1.955±0.00
ENSG00000152683 ENST00000282587 0.905±0.00 N/A N/A 0.582±0.00 1.888±0.13 0.500±0.00 0.793±0.40 1.870±0.22 1.765±0.00 0.640±0.43 N/A 1.560±0.48 0.807±0.00 1.619±0.00
ENST00000357055 N/A N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A 1.311±0.07 0.681±0.00 2.043±0.00 N/A
ENST00000379343 N/A N/A N/A 0.876±0.00 N/A N/A N/A N/A 2.457±0.00 N/A N/A N/A N/A N/A
ENST00000406369 1.294±0.00 0.690±0.00 N/A 0.502±0.00 1.809±0.00 0.513±0.00 0.598±0.00 N/A N/A N/A 0.204±0.00 2.110±1.21 2.794±1.08 1.436±0.52
ENST00000435660 1.494±0.00 1.314±0.00 N/A 0.259±0.00 1.351±0.00 0.654±0.07 0.806±0.00 1.453±0.84 0.957±0.00 0.409±0.00 N/A 0.695±0.00 1.001±0.32 0.795±0.21
ENST00000440718 N/A N/A N/A 4.694±0.00 N/A N/A N/A 4.502±0.00 9.926±0.00 N/A N/A 10.739±0.00 N/A N/A
ENST00000449777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201113 ENST00000364243 N/A 1.581±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229816 ENST00000438163 0.153±0.00 0.318±0.00 0.928±0.00 0.169±0.03 0.322±0.28 0.459±0.41 0.041±0.00 0.078±0.05 0.271±0.21 0.607±0.52 N/A 0.162±0.09 0.046±0.03 0.163±0.07
ENSG00000272716 ENST00000608489 0.273±0.00 1.051±0.00 N/A 0.478±0.00 0.242±0.17 0.332±0.00 0.155±0.11 0.252±0.00 0.103±0.02 0.557±0.00 0.187±0.00 0.273±0.11 0.057±0.00 0.679±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024068 ENSMUST00000024869 4.047±1.10 7.764±3.88 4.522±0.40 19.209±9.54 3.328±1.13 3.741±0.98 2.126±0.64 2.207±0.12 3.636±0.56 3.885±0.54 3.354±0.59 7.086±1.66 5.337±0.51 9.048±0.30
ENSMUSG00000024069 ENSMUST00000024870 9.501±4.58 8.951±1.50 8.728±0.68 5.622±3.36 9.966±0.50 9.790±1.60 4.285±1.30 13.106±1.77 7.324±2.01 10.419±0.29 1.557±0.28 7.820±3.57 8.422±4.67 3.350±1.86
ENSMUST00000179074 N/A 4.281±0.00 N/A N/A 10.296±0.57 N/A N/A N/A 1.308±0.00 1.470±0.00 N/A 11.315±1.33 N/A 0.821±0.00

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