C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secretion associated, Ras related GTPase 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152700 SAR1B 9606 - 5:134601144-134649271 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000402673 SAR1B-001 134601144-134632988 protein_coding
  ENST00000439578 SAR1B-002 134606802-134632774 protein_coding
  ENST00000502286 SAR1B-006 134609610-134632825 protein_coding
  ENST00000502539 SAR1B-009 134606738-134613086 protein_coding
  ENST00000503318 SAR1B-008 134606990-134624037 nonsense_mediated_decay
  ENST00000504242 SAR1B-005 134631602-134632809 processed_transcript
  ENST00000505758 SAR1B-011 134607037-134632769 protein_coding
  ENST00000507419 SAR1B-004 134606429-134649271 protein_coding
  ENST00000508363 SAR1B-003 134606430-134614903 retained_intron
  ENST00000509730 SAR1B-007 134606987-134613137 protein_coding
  ENST00000509937 SAR1B-010 134606949-134613110 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402673ENST00000439578ENST00000508363ENST00000509937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402673 8.694±0.00 4.822±0.00 1.915±0.00 7.669±2.15 7.121±3.41 3.550±0.10 4.487±2.04 11.069±3.62 10.561±4.57 3.243±0.30 20.746±10.31 3.487±1.50 1.680±0.36 4.010±1.92
ENST00000439578 N/A N/A N/A N/A N/A N/A 9.103±3.24 31.929±0.00 N/A N/A N/A N/A 7.707±0.28 N/A
ENST00000508363 N/A N/A 1.101±0.00 N/A 2.195±0.00 N/A N/A N/A N/A 1.576±0.00 N/A 1.013±0.00 N/A 3.066±0.00
ENST00000509937 N/A N/A 15.480±0.00 26.855±0.00 23.760±0.00 N/A N/A N/A N/A 15.691±0.00 78.559±0.00 7.623±0.00 12.370±0.00 22.331±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_00062X CIL_00062X_0002 CGP 5:134601144-134727823

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0003924 TAS:IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005783 IEA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005794 IEA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006184 TAS GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016192 IEA vesicle-mediated transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019001 IEA guanyl nucleotide binding
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0048208 TAS COPII vesicle coating
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068600 sar1b SAR1 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000020386 Sar1b SAR1 gene homolog B (S. cerevisiae) protein_coding Mus_musculus

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