C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secretion associated, Ras related GTPase 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402673 SAR1B-001 ENSG00000152700 9606 - 5:134601144-134632988 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402673 8.694±0.00 4.822±0.00 1.915±0.00 7.669±2.15 7.121±3.41 3.550±0.10 4.487±2.04 11.069±3.62 10.561±4.57 3.243±0.30 20.746±10.31 3.487±1.50 1.680±0.36 4.010±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_00062X CIL_00062X_0002 CGP 5:134601144-134727823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0003924 TAS:IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005783 IEA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005794 IEA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006184 TAS GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016192 IEA vesicle-mediated transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019001 IEA guanyl nucleotide binding
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0048208 TAS COPII vesicle coating
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020653 Sar1b-001 protein_coding Mus_musculus 0 1118
ENSDART00000099280 sar1b-201 protein_coding Danio_rerio 0 436
ENSDART00000149354 sar1b-001 protein_coding Danio_rerio 0 436
ENSMUST00000136363 Sar1b-002 processed_transcript Mus_musculus 0 259
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000002 68

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