C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152784 PRDM8 9606 + 4:80183879-80204329 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339711 PRDM8-201 80185270-80204326 protein_coding
  ENST00000415738 PRDM8-001 80197504-80204324 protein_coding
  ENST00000504452 PRDM8-003 80184285-80204329 protein_coding
  ENST00000506547 PRDM8-008 80184264-80196419 processed_transcript
  ENST00000507025 PRDM8-011 80185368-80196497 processed_transcript
  ENST00000508061 PRDM8-010 80184302-80196601 processed_transcript
  ENST00000508965 PRDM8-005 80183879-80196598 processed_transcript
  ENST00000509375 PRDM8-006 80183881-80197121 processed_transcript
  ENST00000511825 PRDM8-009 80184285-80197195 processed_transcript
  ENST00000515013 PRDM8-004 80185270-80202745 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000415738ENST00000504452ENST00000506547ENST00000507025ENST00000509375ENST00000515013
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000415738 0.943±0.00 0.472±0.00 0.418±0.00 9.861±0.06 0.556±0.03 1.328±0.65 0.187±0.10 0.310±0.22 1.245±1.19 0.140±0.00 0.142±0.00 0.137±0.00 0.564±0.25 0.350±0.00
ENST00000504452 0.248±0.00 N/A N/A N/A N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A 0.127±0.00 N/A
ENST00000506547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.924±0.00 1.638±0.00 N/A
ENST00000507025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.691±0.00 0.297±0.00
ENST00000509375 N/A N/A 0.492±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515013 N/A N/A 0.065±0.00 N/A 0.659±0.00 N/A N/A N/A N/A 0.122±0.00 N/A 0.351±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069U CIL_00069U_0001 CGP 4:79901149-80204329
CIL_00069V CIL_00069V_0001 CGP 4:80183879-80336680

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016571 IEA histone methylation
GO:0021540 IEA corpus callosum morphogenesis
GO:0021952 IEA central nervous system projection neuron axonogenesis
GO:0021957 IEA corticospinal tract morphogenesis
GO:0022008 IEA neurogenesis
GO:0042054 IEA histone methyltransferase activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046974 IEA histone methyltransferase activity (H3-K9 specific)
GO:0051567 IEA histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000035456 Prdm8 PR domain containing 8 protein_coding Mus_musculus

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