C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339711 PRDM8-201 ENSG00000152784 9606 + 4:80185270-80204326 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069U CIL_00069U_0001 CGP 4:79901149-80204329
CIL_00069V CIL_00069V_0001 CGP 4:80183879-80336680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016571 IEA histone methylation
GO:0021540 IEA corpus callosum morphogenesis
GO:0021952 IEA central nervous system projection neuron axonogenesis
GO:0021957 IEA corticospinal tract morphogenesis
GO:0022008 IEA neurogenesis
GO:0042054 IEA histone methyltransferase activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046974 IEA histone methyltransferase activity (H3-K9 specific)
GO:0051567 IEA histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112959 Prdm8-201 protein_coding Mus_musculus 0 2843
ENSMUST00000057889 A730035I17Rik-201 pseudogene Mus_musculus 0 431

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