C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calmegin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153132 CLGN 9606 - 4:140388455-140427968 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325617 CLGN-001 140388455-140427968 protein_coding
  ENST00000414773 CLGN-201 140388455-140427661 protein_coding
  ENST00000509477 CLGN-004 140400512-140427610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325617ENST00000414773ENST00000509477
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325617 0.259±0.00 N/A 1.434±0.56 N/A 0.560±0.00 13.636±6.54 N/A 1.624±1.59 0.523±0.00 N/A 0.542±0.49 0.165±0.11 38.807±26.41
ENST00000414773 0.077±0.00 0.546±0.00 N/A 0.109±0.00 0.506±0.44 4.522±0.00 0.146±0.00 N/A 0.619±0.00 0.101±0.00 N/A 0.025±0.00 15.148±6.29
ENST00000509477 N/A N/A N/A N/A 0.179±0.00 N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MV CIL_0006MV_0002 CGP 4:140257286-140427968

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005635 IEA nuclear envelope
GO:0005783 IDA:IEA endoplasmic reticulum
GO:0006457 IEA protein folding
GO:0006461 IEA protein complex assembly
GO:0007338 TAS single fertilization
GO:0007339 IEA binding of sperm to zona pellucida
GO:0016021 IEA integral component of membrane
GO:0044183 IEA protein binding involved in protein folding
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009315 clgn calmegin protein_coding Danio_rerio
ENSMUSG00000002190 Clgn calmegin protein_coding Mus_musculus

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