C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAN binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153201 RANBP2 9606 + 2:108719481-108785811 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283195 RANBP2-001 108719481-108785811 protein_coding
  ENST00000425282 RANBP2-011 108719553-108735551 nonsense_mediated_decay
  ENST00000495506 RANBP2-008 108751551-108753097 retained_intron
  ENST00000495924 RANBP2-009 108730817-108731898 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283195
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283195 5.852±0.00 5.759±0.00 3.218±0.00 6.883±1.52 7.083±0.85 4.405±0.30 3.678±1.79 5.743±0.52 4.427±1.29 5.120±0.16 2.580±0.06 9.674±6.64 3.797±2.24 16.195±3.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0001 VISTA 2:108335931-108937600
CIL_00010W CIL_00010W_0001 CGP 2:108534355-108785811
CIL_00047P CIL_00047P_0001 CGP 2:108719481-108885477

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000413 IEA protein peptidyl-prolyl isomerization
GO:0003723 IEA RNA binding
GO:0003755 IEA peptidyl-prolyl cis-trans isomerase activity
GO:0005515 IPI:IEA protein binding
GO:0005643 IDA nuclear pore
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006457 IEA protein folding
GO:0006606 TAS protein import into nucleus
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008270 IEA zinc ion binding
GO:0008536 TAS Ran GTPase binding
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016874 IEA ligase activity
GO:0016925 IEA protein sumoylation
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA nuclear membrane
GO:0033132 IEA negative regulation of glucokinase activity
GO:0042405 IDA nuclear inclusion body
GO:0044281 TAS small molecule metabolic process
GO:0044615 IDA nuclear pore nuclear basket
GO:0046907 IEA intracellular transport
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport
GO:0090526 IEA regulation of gluconeogenesis involved in cellular glucose homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011652 TRIM47 (5 of 90) RAN binding protein 2 protein_coding Danio_rerio
ENSMUSG00000003226 Ranbp2 RAN binding protein 2 protein_coding Mus_musculus

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