C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00010W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169756-ENSG00000153201 CGP 9606 2:108534355-108785811
GeneTranscriptPositionBiotype
ENSG00000153201 (RANBP2)
RAN binding protein 2 		ENST00000283195 (RANBP2-001) 108719481-108785811 protein_coding
ENST00000425282 (RANBP2-011) 108719553-108735551 nonsense_mediated_decay
ENST00000495506 (RANBP2-008) 108751551-108753097 retained_intron
ENST00000495924 (RANBP2-009) 108730817-108731898 retained_intron
ENSG00000169756 (LIMS1)
LIM and senescent cell antigen-like domains 1 		ENST00000332345 (LIMS1-002) 108588311-108684137 protein_coding
ENST00000338045 (LIMS1-014) 108654812-108684448 protein_coding
ENST00000393310 (LIMS1-001) 108588466-108687246 protein_coding
ENST00000409441 (LIMS1-003) 108621266-108684448 protein_coding
ENST00000410093 (LIMS1-006) 108607161-108684448 protein_coding
ENST00000414829 (LIMS1-005) 108655053-108662303 nonsense_mediated_decay
ENST00000422797 (LIMS1-004) 108621273-108673953 nonsense_mediated_decay
ENST00000428064 (LIMS1-007) 108534456-108673029 protein_coding
ENST00000434274 (LIMS1-011) 108657894-108662800 nonsense_mediated_decay
ENST00000449684 (LIMS1-008) 108621251-108670815 processed_transcript
ENST00000462817 (LIMS1-009) 108655012-108660313 processed_transcript
ENST00000474038 (LIMS1-010) 108654919-108659945 retained_intron
ENST00000480744 (LIMS1-012) 108675877-108681012 processed_transcript
ENST00000496653 (LIMS1-013) 108655016-108671005 retained_intron
ENST00000542845 (LIMS1-201) 108654812-108687238 protein_coding
ENST00000544547 (LIMS1-202) 108534355-108687238 protein_coding
ENSG00000228763 (AC010095.5)
 ENST00000411710 (AC010095.5-001) 108676795-108678601 antisense
ENSG00000233648 (AC010095.6)
 ENST00000443543 (AC010095.6-001) 108694750-108694893 processed_pseudogene
ENSG00000235644 (AC010095.7)
 ENST00000427719 (AC010095.7-001) 108712262-108712900 processed_pseudogene
CIL_00010W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019920-ENSMUSG00000003226 CGP 10090 10:58323466-58494155
GeneTranscriptPositionBiotype
ENSMUSG00000003226 (Ranbp2)
RAN binding protein 2 		ENSMUST00000003310 (Ranbp2-201) 58446852-58494155 protein_coding
ENSMUSG00000070214 (Gm23058)
predicted gene, 23058 		ENSMUST00000093703 (Gm23058-201) 58349498-58349604 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00010W_0001ENSG00000153201ENST00000283195ENST00000425282ENST00000495506ENST00000495924ENSG00000169756ENST00000332345ENST00000338045ENST00000393310ENST00000409441ENST00000410093ENST00000414829ENST00000422797ENST00000428064ENST00000434274ENST00000449684ENST00000462817ENST00000474038ENST00000480744ENST00000496653ENST00000542845ENST00000544547ENSG00000228763ENST00000411710ENSG00000233648ENST00000443543ENSG00000235644ENST00000427719CIL_00010W_0002ENSMUSG00000003226ENSMUST00000003310ENSMUSG00000070214ENSMUST00000093703
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00010W_0001ENSG00000153201ENST00000283195ENSG00000169756ENST00000332345ENST00000393310ENST00000409441ENST00000410093ENST00000542845ENST00000544547ENSG00000228763ENST00000411710ENSG00000233648ENST00000443543ENSG00000235644ENST00000427719CIL_00010W_0002ENSMUSG00000003226ENSMUST00000003310ENSMUSG00000070214ENSMUST00000093703
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153201 ENST00000283195 5.852±0.00 5.759±0.00 3.218±0.00 6.883±1.52 7.083±0.85 4.405±0.30 3.678±1.79 5.743±0.52 4.427±1.29 5.120±0.16 2.580±0.06 9.674±6.64 3.797±2.24 16.195±3.94
ENST00000425282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169756 ENST00000332345 N/A N/A 1.379±0.00 N/A N/A 2.986±0.00 N/A N/A N/A N/A N/A 6.243±0.00 N/A 3.443±0.00
ENST00000338045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393310 N/A N/A N/A 0.735±0.00 1.664±0.00 N/A N/A N/A N/A N/A N/A 1.356±0.11 1.214±0.00 N/A
ENST00000409441 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.370±0.00 N/A N/A N/A N/A
ENST00000410093 N/A N/A N/A 1.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542845 N/A N/A N/A N/A N/A N/A N/A N/A 1.633±0.00 N/A N/A N/A N/A N/A
ENST00000544547 13.736±0.00 8.792±0.00 0.447±0.00 3.904±0.00 5.463±3.78 5.658±3.83 6.663±0.00 6.432±0.00 3.693±0.35 9.711±8.57 8.417±0.00 5.526±3.22 7.965±1.41 6.064±2.85
ENSG00000228763 ENST00000411710 0.109±0.00 0.111±0.00 N/A 0.029±0.00 0.137±0.00 N/A 0.169±0.14 N/A 0.073±0.00 0.149±0.00 N/A 0.061±0.00 0.120±0.00 0.098±0.02
ENSG00000233648 ENST00000443543 N/A N/A N/A N/A N/A N/A 5.377±0.00 N/A 0.250±0.00 N/A 0.084±0.00 N/A N/A 1.056±0.00
ENSG00000235644 ENST00000427719 0.173±0.00 0.154±0.00 N/A 0.034±0.00 0.129±0.00 0.118±0.00 0.055±0.00 0.064±0.00 0.056±0.00 0.119±0.00 0.158±0.00 0.043±0.00 N/A 0.134±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003226 ENSMUST00000003310 3.041±0.10 4.498±2.00 4.449±0.00 6.538±5.79 3.303±1.55 3.276±0.37 1.503±0.48 3.618±0.45 4.143±2.34 4.415±1.68 1.662±0.75 7.233±4.78 15.378±8.91 3.238±1.49
ENSMUSG00000070214 ENSMUST00000093703 N/A N/A 121.446±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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