C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153339 TRAPPC8 9606 - 18:31829173-31953136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283351 TRAPPC8-001 31829173-31943100 protein_coding
  ENST00000577426 TRAPPC8-006 31939395-31953136 processed_transcript
  ENST00000577474 TRAPPC8-008 31871066-31891207 retained_intron
  ENST00000578252 TRAPPC8-009 31870014-31871023 retained_intron
  ENST00000578658 TRAPPC8-005 31913502-31939462 protein_coding
  ENST00000578886 TRAPPC8-010 31846751-31852872 retained_intron
  ENST00000580104 TRAPPC8-003 31829938-31943136 nonsense_mediated_decay
  ENST00000581057 TRAPPC8-013 31830598-31839457 protein_coding
  ENST00000582509 TRAPPC8-011 31830498-31833406 processed_transcript
  ENST00000582513 TRAPPC8-002 31873570-31943106 protein_coding
  ENST00000582539 TRAPPC8-004 31830590-31943026 protein_coding
  ENST00000584604 TRAPPC8-012 31830921-31832595 retained_intron
  ENST00000584876 TRAPPC8-007 31926468-31942989 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283351ENST00000577474ENST00000580104ENST00000581057ENST00000582539
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283351 N/A 1.210±0.00 N/A N/A N/A N/A N/A 1.010±0.00 0.571±0.00 N/A 0.803±0.00 1.103±0.00 0.374±0.00 N/A
ENST00000577474 N/A N/A N/A N/A N/A 8.290±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580104 N/A N/A 1.138±0.00 2.893±0.24 2.809±1.11 2.190±1.18 1.331±0.38 1.250±0.00 1.386±0.70 2.902±2.21 1.356±0.55 1.502±1.09 1.497±0.54 5.396±0.00
ENST00000581057 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.780±0.00 N/A N/A N/A N/A
ENST00000582539 1.687±0.00 3.505±0.00 1.023±0.00 2.619±0.66 0.939±0.00 1.339±0.00 2.266±0.00 3.222±0.00 4.817±0.00 3.599±0.00 0.509±0.00 1.121±0.48 0.858±0.37 10.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FN CIL_0002FN_0002 CGP 18:31829173-32073213

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038866 TRAPPC8 trafficking protein particle complex 8 protein_coding Danio_rerio
ENSMUSG00000033382 Trappc8 trafficking protein particle complex 8 protein_coding Mus_musculus

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