C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002FN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038866-ENSDARG00000081322 CGP 7955 20:6358595-6595777
GeneTranscriptPositionBiotype
ENSDARG00000038866 (TRAPPC8)
trafficking protein particle complex 8 		ENSDART00000077095 (TRAPPC8-201) 6358595-6581574 protein_coding
ENSDARG00000081322 (RNF125)
ring finger protein 125, E3 ubiquitin protein ligase 		ENSDART00000117777 (RNF125-201) 6582578-6595777 protein_coding
ENSDARG00000085915 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000121315 (5S_rRNA.1423-201) 6386264-6386379 rRNA
CIL_0002FN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153339-ENSG00000101695 CGP 9606 18:31829173-32073213
GeneTranscriptPositionBiotype
ENSG00000101695 (RNF125)
ring finger protein 125, E3 ubiquitin protein ligase 		ENST00000217740 (RNF125-001) 32018372-32073213 protein_coding
ENST00000580209 (RNF125-002) 32037185-32066141 nonsense_mediated_decay
ENST00000580863 (RNF125-005) 32042079-32068428 retained_intron
ENST00000583384 (RNF125-003) 32041823-32068489 processed_transcript
ENST00000583814 (RNF125-004) 32041906-32068550 retained_intron
ENSG00000153339 (TRAPPC8)
trafficking protein particle complex 8 		ENST00000283351 (TRAPPC8-001) 31829173-31943100 protein_coding
ENST00000577426 (TRAPPC8-006) 31939395-31953136 processed_transcript
ENST00000577474 (TRAPPC8-008) 31871066-31891207 retained_intron
ENST00000578252 (TRAPPC8-009) 31870014-31871023 retained_intron
ENST00000578658 (TRAPPC8-005) 31913502-31939462 protein_coding
ENST00000578886 (TRAPPC8-010) 31846751-31852872 retained_intron
ENST00000580104 (TRAPPC8-003) 31829938-31943136 nonsense_mediated_decay
ENST00000581057 (TRAPPC8-013) 31830598-31839457 protein_coding
ENST00000582509 (TRAPPC8-011) 31830498-31833406 processed_transcript
ENST00000582513 (TRAPPC8-002) 31873570-31943106 protein_coding
ENST00000582539 (TRAPPC8-004) 31830590-31943026 protein_coding
ENST00000584604 (TRAPPC8-012) 31830921-31832595 retained_intron
ENST00000584876 (TRAPPC8-007) 31926468-31942989 processed_transcript
ENSG00000263924 (RP11-210K20.2)
 ENST00000582269 (RP11-210K20.2-001) 31844388-31845178 antisense
ENSG00000265063 (AC009831.1)
 ENST00000582018 (AC009831.1-201) 32060905-32060989 miRNA
ENSG00000265273 (PGDP1)
phosphogluconate dehydrogenase pseudogene 1 		ENST00000581802 (PGDP1-001) 31962178-31963618 processed_pseudogene
ENSG00000266105 (RP11-326K13.2)
 ENST00000582538 (RP11-326K13.2-001) 31966960-31967545 processed_pseudogene
ENSG00000270518 (RP11-210K20.3)
 ENST00000604384 (RP11-210K20.3-001) 31882620-31882902 processed_pseudogene
ENSG00000270879 (RP11-210K20.4)
 ENST00000605421 (RP11-210K20.4-001) 31884858-31885143 processed_pseudogene
ENSG00000274275 (RP11-326K13.5)
 ENST00000620744 (RP11-326K13.5-001) 32031035-32031359 sense_intronic
ENSG00000276282 (RP11-210K20.5)
 ENST00000616300 (RP11-210K20.5-001) 31895745-31896410 sense_intronic
ENSG00000276486 (RP11-210K20.6)
 ENST00000619794 (RP11-210K20.6-001) 31883288-31883728 processed_pseudogene
ENSG00000280380 (RP11-326K13.3)
 ENST00000624000 (RP11-326K13.3-001) 31982899-31986087 TEC
CIL_0002FN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033382-ENSMUSG00000033107 CGP 10090 18:20817224-20983848
GeneTranscriptPositionBiotype
ENSMUSG00000033107 (Rnf125)
ring finger protein 125 		ENSMUST00000050004 (Rnf125-201) 20944625-20983848 protein_coding
ENSMUSG00000033382 (Trappc8)
trafficking protein particle complex 8 		ENSMUST00000025177 (Trappc8-201) 20817224-20896078 protein_coding
ENSMUST00000097658 (Trappc8-202) 20846145-20896078 protein_coding
ENSMUSG00000088549 (Gm24959)
predicted gene, 24959 		ENSMUST00000157924 (Gm24959-201) 20844447-20844592 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FN_0001ENSDARG00000038866ENSDART00000077095ENSDARG00000081322ENSDART00000117777ENSDARG00000085915ENSDART00000121315CIL_0002FN_0002ENSG00000101695ENST00000217740ENST00000580209ENST00000580863ENST00000583384ENST00000583814ENSG00000153339ENST00000283351ENST00000577426ENST00000577474ENST00000578252ENST00000578658ENST00000578886ENST00000580104ENST00000581057ENST00000582509ENST00000582513ENST00000582539ENST00000584604ENST00000584876ENSG00000263924ENST00000582269ENSG00000265063ENST00000582018ENSG00000265273ENST00000581802ENSG00000266105ENST00000582538ENSG00000270518ENST00000604384ENSG00000270879ENST00000605421ENSG00000274275ENST00000620744ENSG00000276282ENST00000616300ENSG00000276486ENST00000619794ENSG00000280380ENST00000624000CIL_0002FN_0003ENSMUSG00000033107ENSMUST00000050004ENSMUSG00000033382ENSMUST00000025177ENSMUST00000097658ENSMUSG00000088549ENSMUST00000157924
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FN_0001ENSDARG00000038866ENSDART00000077095ENSDARG00000081322ENSDART00000117777ENSDARG00000085915ENSDART00000121315CIL_0002FN_0002ENSG00000101695ENST00000217740ENST00000580209ENSG00000153339ENST00000283351ENST00000577474ENST00000580104ENST00000581057ENST00000582539ENSG00000263924ENST00000582269ENSG00000265063ENST00000582018ENSG00000265273ENST00000581802ENSG00000266105ENST00000582538ENSG00000270518ENST00000604384ENSG00000270879ENST00000605421ENSG00000274275ENST00000620744ENSG00000276282ENST00000616300ENSG00000276486ENST00000619794ENSG00000280380ENST00000624000CIL_0002FN_0003ENSMUSG00000033107ENSMUST00000050004ENSMUSG00000033382ENSMUST00000025177ENSMUST00000097658ENSMUSG00000088549ENSMUST00000157924
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038866 ENSDART00000077095 N/A N/A N/A 3.660±2.98 N/A N/A 1.649±1.16 1.281±0.00 0.630±0.00 N/A 2.434±0.00 N/A N/A N/A
ENSDARG00000081322 ENSDART00000117777 N/A N/A N/A 1.894±0.25 N/A N/A 1.125±0.53 1.551±0.32 0.441±0.00 N/A 0.703±0.00 N/A N/A N/A
ENSDARG00000085915 ENSDART00000121315 N/A N/A N/A N/A N/A N/A N/A N/A 1.157±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101695 ENST00000217740 2.548±0.00 1.709±0.00 N/A 0.577±0.19 1.297±0.71 1.065±0.02 1.077±0.00 1.082±0.25 1.344±0.51 1.113±0.52 N/A 0.674±0.19 1.052±0.00 N/A
ENST00000580209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.643±0.00 N/A N/A N/A
ENST00000580863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153339 ENST00000283351 N/A 1.210±0.00 N/A N/A N/A N/A N/A 1.010±0.00 0.571±0.00 N/A 0.803±0.00 1.103±0.00 0.374±0.00 N/A
ENST00000577426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577474 N/A N/A N/A N/A N/A 8.290±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580104 N/A N/A 1.138±0.00 2.893±0.24 2.809±1.11 2.190±1.18 1.331±0.38 1.250±0.00 1.386±0.70 2.902±2.21 1.356±0.55 1.502±1.09 1.497±0.54 5.396±0.00
ENST00000581057 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.780±0.00 N/A N/A N/A N/A
ENST00000582509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582539 1.687±0.00 3.505±0.00 1.023±0.00 2.619±0.66 0.939±0.00 1.339±0.00 2.266±0.00 3.222±0.00 4.817±0.00 3.599±0.00 0.509±0.00 1.121±0.48 0.858±0.37 10.413±0.00
ENST00000584604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263924 ENST00000582269 0.060±0.00 0.584±0.00 3.071±0.00 0.425±0.36 0.573±0.45 3.976±0.00 0.518±0.41 2.321±0.00 0.948±0.88 0.178±0.00 0.456±0.43 0.149±0.07 N/A 0.162±0.10
ENSG00000265063 ENST00000582018 N/A N/A N/A N/A N/A N/A N/A 1.317±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000265273 ENST00000581802 0.052±0.00 0.011±0.00 N/A 0.012±0.00 0.080±0.00 0.010±0.00 0.010±0.00 0.022±0.00 0.030±0.00 N/A 0.010±0.00 N/A 0.020±0.00 0.092±0.01
ENSG00000266105 ENST00000582538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENSG00000270518 ENST00000604384 0.288±0.00 0.582±0.00 N/A N/A 0.683±0.00 0.138±0.00 0.134±0.00 N/A 0.065±0.00 0.396±0.00 N/A N/A N/A 0.068±0.00
ENSG00000270879 ENST00000605421 1.068±0.00 1.344±0.00 N/A 1.331±0.00 1.441±0.00 0.256±0.00 0.263±0.00 0.572±0.00 0.160±0.00 0.499±0.00 0.322±0.00 1.017±0.43 0.706±0.00 1.595±0.55
ENSG00000274275 ENST00000620744 0.166±0.00 0.251±0.00 N/A N/A 1.959±1.63 1.049±0.00 0.221±0.15 N/A N/A N/A N/A N/A 0.276±0.00 N/A
ENSG00000276282 ENST00000616300 0.029±0.00 0.193±0.00 N/A 0.944±0.50 0.127±0.00 0.111±0.00 0.063±0.00 0.097±0.00 N/A 0.245±0.00 0.023±0.00 0.106±0.04 0.152±0.00 0.049±0.00
ENSG00000276486 ENST00000619794 N/A 0.308±0.00 N/A 0.208±0.00 N/A N/A N/A N/A N/A 0.184±0.00 N/A 0.249±0.00 N/A N/A
ENSG00000280380 ENST00000624000 0.060±0.00 0.155±0.00 N/A 0.119±0.00 0.063±0.00 0.035±0.00 0.034±0.03 0.083±0.04 0.013±0.00 0.064±0.03 0.007±0.00 0.003±0.00 0.008±0.00 0.053±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033107 ENSMUST00000050004 4.374±0.12 N/A N/A 0.233±0.09 3.910±0.05 3.028±0.73 2.521±0.00 1.235±0.15 6.123±6.44 5.319±0.00 0.571±0.19 1.379±0.89 0.731±0.39 5.501±2.14
ENSMUSG00000033382 ENSMUST00000025177 3.475±0.87 8.111±1.66 4.441±1.18 4.467±1.28 5.420±2.40 3.281±2.00 4.197±1.10 4.633±1.01 3.863±1.15 4.985±3.19 3.176±1.95 6.222±2.34 7.179±3.36 2.525±1.42
ENSMUST00000097658 N/A 14.402±0.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088549 ENSMUST00000157924 N/A N/A N/A 3.324±0.00 N/A N/A N/A N/A N/A N/A N/A 6.556±0.00 5.247±2.26 N/A

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