C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153993 SEMA3D 9606 - 7:84995553-85186855 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284136 SEMA3D-001 84995553-85121935 protein_coding
  ENST00000444867 SEMA3D-002 85050357-85186855 protein_coding
  ENST00000463315 SEMA3D-003 85041078-85055765 retained_intron
  ENST00000484038 SEMA3D-004 84999397-85041939 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284136ENST00000444867ENST00000463315ENST00000484038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284136 0.306±0.00 2.380±0.00 0.474±0.00 0.175±0.00 0.267±0.02 0.605±0.05 0.096±0.01 0.546±0.10 1.265±1.20 1.235±0.00 0.032±0.00 0.237±0.22 0.084±0.01 1.999±1.69
ENST00000444867 N/A N/A N/A 1.008±0.00 1.696±0.00 0.686±0.00 0.530±0.00 N/A N/A 1.745±0.00 N/A 0.008±0.00 N/A N/A
ENST00000463315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A
ENST00000484038 N/A N/A N/A 0.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 2.542±1.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PY CIL_0008PY_0001 VISTA 7:84764651-85368525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017369 sema3d semaphorin 3d protein_coding Danio_rerio
ENSMUSG00000040254 Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein_coding Mus_musculus

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