C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008PY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm832 VISTA 9606 7:84764651-85368525
GeneTranscriptPositionBiotype
ENSG00000153993 (SEMA3D)
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 		ENST00000284136 (SEMA3D-001) 84995553-85121935 protein_coding
ENST00000444867 (SEMA3D-002) 85050357-85186855 protein_coding
ENST00000463315 (SEMA3D-003) 85041078-85055765 retained_intron
ENST00000484038 (SEMA3D-004) 84999397-85041939 processed_transcript
ENSG00000224059 (HSPA8P16)
heat shock 70kDa protein 8 pseudogene 16 		ENST00000454171 (HSPA8P16-001) 85027828-85029692 processed_pseudogene
ENSG00000229251 (HNRNPA1P8)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 8 		ENST00000436090 (HNRNPA1P8-001) 84983556-84984506 processed_pseudogene
ENSG00000232605 (HMGN2P11)
high mobility group nucleosomal binding domain 2 pseudogene 11 		ENST00000446054 (HMGN2P11-001) 84876554-84876956 processed_pseudogene
ENSG00000235243 (AC093716.1)
 ENST00000435923 (AC093716.1-001) 84847877-84848253 processed_pseudogene
ENSG00000280325 (SNHG7)
small nucleolar RNA host gene 7 (non-protein coding) 		ENST00000623112 (SNHG7-001) 84939335-84940256 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008PY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm832 VISTA 10090 5:12205539-12809076
GeneTranscriptPositionBiotype
ENSMUSG00000040254 (Sema3d)
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 		ENSMUST00000030868 (Sema3d-201) 12383166-12588943 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PY_0001ENSG00000153993ENST00000284136ENST00000444867ENST00000463315ENST00000484038ENSG00000224059ENST00000454171ENSG00000229251ENST00000436090ENSG00000232605ENST00000446054ENSG00000235243ENST00000435923ENSG00000280325ENST00000623112CIL_0008PY_0002ENSMUSG00000040254ENSMUST00000030868
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PY_0001ENSG00000153993ENST00000284136ENST00000444867ENST00000463315ENST00000484038ENSG00000224059ENST00000454171ENSG00000229251ENST00000436090ENSG00000232605ENST00000446054ENSG00000235243ENST00000435923ENSG00000280325ENST00000623112CIL_0008PY_0002ENSMUSG00000040254ENSMUST00000030868
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153993 ENST00000284136 0.306±0.00 2.380±0.00 0.474±0.00 0.175±0.00 0.267±0.02 0.605±0.05 0.096±0.01 0.546±0.10 1.265±1.20 1.235±0.00 0.032±0.00 0.237±0.22 0.084±0.01 1.999±1.69
ENST00000444867 N/A N/A N/A 1.008±0.00 1.696±0.00 0.686±0.00 0.530±0.00 N/A N/A 1.745±0.00 N/A 0.008±0.00 N/A N/A
ENST00000463315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A
ENST00000484038 N/A N/A N/A 0.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 2.542±1.06
ENSG00000224059 ENST00000454171 0.006±0.00 N/A N/A 0.052±0.00 N/A N/A 0.027±0.02 0.006±0.00 0.006±0.00 N/A N/A 0.043±0.00 0.121±0.00 0.044±0.00
ENSG00000229251 ENST00000436090 0.081±0.00 0.142±0.00 N/A N/A 0.043±0.00 0.039±0.00 0.026±0.00 0.014±0.00 0.013±0.00 0.014±0.00 0.094±0.06 0.104±0.07 0.106±0.05 1.543±0.87
ENSG00000232605 ENST00000446054 N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A 0.096±0.00
ENSG00000235243 ENST00000435923 0.036±0.00 0.038±0.00 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A 0.149±0.01 0.687±0.11
ENSG00000280325 ENST00000623112 3.570±0.00 8.223±0.00 N/A 0.822±0.69 4.582±0.00 6.138±0.00 1.407±0.00 4.157±0.00 0.759±0.54 5.559±0.00 1.990±0.00 5.944±6.28 3.694±2.37 3.572±2.54
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040254 ENSMUST00000030868 0.814±0.14 0.485±0.13 2.784±0.21 0.324±0.08 1.287±0.17 0.307±0.10 0.717±0.10 1.066±0.11 0.390±0.16 1.524±0.30 0.094±0.02 9.657±6.78 0.062±0.07 0.029±0.02

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