C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ABI family, member 3 (NESH) binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154175 ABI3BP 9606 - 3:100749156-100993515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284322 ABI3BP-001 100749335-100993515 protein_coding
  ENST00000459682 ABI3BP-011 100850045-100862863 protein_coding
  ENST00000466947 ABI3BP-013 100794923-100846430 protein_coding
  ENST00000469764 ABI3BP-020 100774604-100778627 processed_transcript
  ENST00000470336 ABI3BP-007 100749335-100846549 retained_intron
  ENST00000471714 ABI3BP-002 100749156-100993515 protein_coding
  ENST00000471901 ABI3BP-015 100780131-100832314 protein_coding
  ENST00000475896 ABI3BP-003 100862418-100993450 retained_intron
  ENST00000478235 ABI3BP-016 100794923-100832305 protein_coding
  ENST00000482765 ABI3BP-017 100794923-100812524 protein_coding
  ENST00000483129 ABI3BP-010 100862311-100885578 protein_coding
  ENST00000486770 ABI3BP-019 100770887-100804852 protein_coding
  ENST00000487012 ABI3BP-009 100750456-100837193 retained_intron
  ENST00000487249 ABI3BP-014 100830578-100837323 retained_intron
  ENST00000495063 ABI3BP-006 100816011-100993453 protein_coding
  ENST00000495591 ABI3BP-008 100750240-100846428 protein_coding
  ENST00000497021 ABI3BP-021 100752507-100765906 retained_intron
  ENST00000497395 ABI3BP-018 100775291-100804844 protein_coding
  ENST00000527258 ABI3BP-023 100875530-100914464 protein_coding
  ENST00000527943 ABI3BP-028 100794923-100811277 protein_coding
  ENST00000528305 ABI3BP-029 100813661-100866956 protein_coding
  ENST00000528490 ABI3BP-030 100828393-100847673 protein_coding
  ENST00000530236 ABI3BP-024 100898804-100993421 nonsense_mediated_decay
  ENST00000530539 ABI3BP-022 100886142-100993492 protein_coding
  ENST00000532144 ABI3BP-025 100898837-100930994 processed_transcript
  ENST00000533795 ABI3BP-026 100808193-100840162 protein_coding
  ENST00000533855 ABI3BP-027 100838407-100866920 protein_coding
  ENST00000534256 ABI3BP-031 100837124-100842030 protein_coding
  ENST00000534413 ABI3BP-032 100832264-100840858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284322ENST00000459682ENST00000466947ENST00000470336ENST00000471714ENST00000475896ENST00000487012ENST00000495063ENST00000495591ENST00000497395ENST00000527258ENST00000527943ENST00000530539
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284322 2.924±0.00 1.415±0.00 N/A 0.805±0.00 2.184±0.36 2.594±0.26 1.976±1.12 1.980±0.00 2.306±0.00 13.155±8.46 0.707±0.00 3.516±2.33 12.628±6.76 4.871±0.00
ENST00000459682 N/A N/A N/A N/A N/A N/A N/A 14.385±0.00 N/A N/A N/A N/A N/A N/A
ENST00000466947 N/A N/A N/A N/A N/A N/A N/A 1.641±0.00 N/A N/A N/A N/A N/A N/A
ENST00000470336 N/A 2.756±0.00 N/A N/A 3.447±0.00 7.190±0.00 N/A 1.044±0.57 0.394±0.00 9.029±0.00 1.005±0.00 7.781±5.82 36.250±0.00 4.280±0.00
ENST00000471714 N/A N/A N/A 0.368±0.00 1.554±0.68 2.857±0.00 0.540±0.30 N/A 0.819±0.00 4.996±0.00 N/A 2.129±0.25 N/A 1.246±0.35
ENST00000475896 N/A N/A N/A N/A N/A N/A N/A N/A 1.859±0.00 N/A N/A 1.665±0.00 N/A N/A
ENST00000487012 N/A N/A N/A 0.996±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495063 N/A N/A N/A N/A N/A N/A 0.607±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000495591 2.656±0.00 N/A N/A 0.640±0.00 N/A N/A 1.871±0.00 1.146±0.00 N/A N/A 1.509±0.00 N/A N/A N/A
ENST00000497395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.021±0.00 175.772±0.00 12.148±0.00
ENST00000527258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.334±0.00 N/A N/A N/A
ENST00000527943 N/A N/A 12.139±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530539 N/A N/A N/A N/A N/A N/A N/A 3.011±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022O CIL_00022O_0002 CGP 3:100709331-100993515

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005518 IEA collagen binding
GO:0005539 IEA glycosaminoglycan binding
GO:0005614 IEA interstitial matrix
GO:0005615 IDA extracellular space
GO:0008201 IEA heparin binding
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0030198 IEA extracellular matrix organization
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062156 ABI3BP (1 of 2) ABI family, member 3 (NESH) binding protein protein_coding Danio_rerio
ENSDARG00000071095 abi3bp ABI family, member 3 (NESH) binding protein protein_coding Danio_rerio
ENSMUSG00000035258 Abi3bp ABI gene family, member 3 (NESH) binding protein protein_coding Mus_musculus

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