C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154258 ABCA9 9606 - 17:68974488-69061064 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340001 ABCA9-001 68974488-69061064 protein_coding
  ENST00000453985 ABCA9-002 68974632-69060924 protein_coding
  ENST00000460872 ABCA9-006 68989925-68992682 retained_intron
  ENST00000461623 ABCA9-004 69032601-69049357 retained_intron
  ENST00000482072 ABCA9-005 68986608-68989141 processed_transcript
  ENST00000492580 ABCA9-007 69011825-69017772 retained_intron
  ENST00000495634 ABCA9-003 69042915-69060906 protein_coding
  ENST00000585714 ABCA9-008 69049318-69060949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340001ENST00000453985ENST00000495634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340001 3.287±0.00 0.282±0.00 0.411±0.00 0.216±0.05 1.917±0.27 2.394±1.05 1.675±0.51 N/A 1.382±1.02 0.493±0.01 0.584±0.45 1.999±0.20 0.060±0.00 0.860±0.38
ENST00000453985 5.647±0.00 0.633±0.00 N/A 0.246±0.12 2.478±0.00 9.094±0.00 2.218±0.57 0.775±0.49 1.362±1.02 1.323±0.00 1.141±0.00 1.002±0.68 0.029±0.00 1.754±0.00
ENST00000495634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.424±0.00 0.131±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037T CIL_00037T_0001 CGP 17:68974488-69141888

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000041797 Abca9 ATP-binding cassette, sub-family A (ABC1), member 9 protein_coding Mus_musculus

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